Literature DB >> 18929141

Site-directed spin labeling studies on nucleic acid structure and dynamics.

Glenna Z Sowa1, Peter Z Qin.   

Abstract

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Year:  2008        PMID： 18929141      PMCID： PMC2766621          DOI： 10.1016/S0079-6603(08)00005-6

Source DB:  PubMed          Journal:  Prog Nucleic Acid Res Mol Biol        ISSN： 0079-6603


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  96 in total

Review 1.  A new spin on protein dynamics.

Authors:  Linda Columbus; Wayne L Hubbell
Journal:  Trends Biochem Sci       Date:  2002-06       Impact factor: 13.807

2.  Monitoring RNA base structure and dynamics using site-directed spin labeling.

Authors:  Peter Z Qin; Kálmán Hideg; Juli Feigon; Wayne L Hubbell
Journal:  Biochemistry       Date:  2003-06-10       Impact factor: 3.162

3.  Molecular dynamics simulation of site-directed spin labeling: experimental validation in muscle fibers.

Authors:  Leslie E W LaConte; Vincent Voelz; Wendy Nelson; Michael Enz; David D Thomas
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

4.  A nucleoside that contains a rigid nitroxide spin label: a fluorophore in disguise.

Authors:  Nivrutti Barhate; Pavol Cekan; Archna P Massey; Snorri Th Sigurdsson
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Local base dynamics and local structural features in RNA and DNA duplexes.

Authors:  S C Kao; A M Bobst
Journal:  Biochemistry       Date:  1985-09-24       Impact factor: 3.162

6.  A novel 5 displacement spin-labeling technique for electron paramagnetic resonance spectroscopy of RNA.

Authors:  J C Macosko; M S Pio; I Tinoco; Y K Shin
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

7.  A model system for investigating lineshape/structure correlations in RNA site-directed spin labeling.

Authors:  Peter Z Qin; Jennifer Iseri; Arisa Oki
Journal:  Biochem Biophys Res Commun       Date:  2006-03-03       Impact factor: 3.575

8.  A PELDOR-based nanometer distance ruler for oligonucleotides.

Authors:  Olav Schiemann; Nelly Piton; Yuguang Mu; Gerhard Stock; Joachim W Engels; Thomas F Prisner
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

9.  Computation of nitroxide-nitroxide distances in spin-labeled DNA duplexes.

Authors:  Eric A Price; Brian T Sutch; Qi Cai; Peter Z Qin; Ian S Haworth
Journal:  Biopolymers       Date:  2007-09       Impact factor: 2.505

10.  Structure of the P1 helix from group I self-splicing introns.

Authors:  F H Allain; G Varani
Journal:  J Mol Biol       Date:  1995-07-14       Impact factor: 5.469
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  28 in total

1.  A nucleotide-independent nitroxide probe reports on site-specific stereomeric environment in DNA.

Authors:  Anna M Popova; Peter Z Qin
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Conformational distributions at the N-peptide/boxB RNA interface studied using site-directed spin labeling.

Authors:  Xiaojun Zhang; Sang Won Lee; Liang Zhao; Tianbing Xia; Peter Z Qin
Journal:  RNA       Date:  2010-10-27       Impact factor: 4.942

3.  An Integrated Spin-Labeling/Computational-Modeling Approach for Mapping Global Structures of Nucleic Acids.

Authors:  Narin S Tangprasertchai; Xiaojun Zhang; Yuan Ding; Kenneth Tham; Remo Rohs; Ian S Haworth; Peter Z Qin
Journal:  Methods Enzymol       Date:  2015-08-08       Impact factor: 1.600

4.  Structural origin of weakly ordered nitroxide motion in spin-labeled proteins.

Authors:  Mark R Fleissner; Duilio Cascio; Wayne L Hubbell
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

5.  Site-specific DNA structural and dynamic features revealed by nucleotide-independent nitroxide probes.

Authors:  Anna M Popova; Tamás Kálai; Kálmán Hideg; Peter Z Qin
Journal:  Biochemistry       Date:  2009-09-15       Impact factor: 3.162

Review 6.  Paramagnetic labelling of proteins and oligonucleotides for NMR.

Authors:  Xun-Cheng Su; Gottfried Otting
Journal:  J Biomol NMR       Date:  2009-06-16       Impact factor: 2.835

7.  Continuous wave W- and D-band EPR spectroscopy offer "sweet-spots" for characterizing conformational changes and dynamics in intrinsically disordered proteins.

Authors:  Thomas M Casey; Zhanglong Liu; Jackie M Esquiaqui; Natasha L Pirman; Eugene Milshteyn; Gail E Fanucci
Journal:  Biochem Biophys Res Commun       Date:  2014-06-17       Impact factor: 3.575

Review 8.  RNA dynamics: perspectives from spin labels.

Authors:  Phuong Nguyen; Peter Z Qin
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-08-22       Impact factor: 9.957

Review 9.  The two sides of a lipid-protein story.

Authors:  Luis G Mansor Basso; Luis F Santos Mendes; Antonio J Costa-Filho
Journal:  Biophys Rev       Date:  2016-04-30

10.  Experimental mapping of DNA duplex shape enabled by global lineshape analyses of a nucleotide-independent nitroxide probe.

Authors:  Yuan Ding; Xiaojun Zhang; Kenneth W Tham; Peter Z Qin
Journal:  Nucleic Acids Res       Date:  2014-08-04       Impact factor: 16.971
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