Literature DB >> 15188858

On the variability of manual spike sorting.

Frank Wood1, Michael J Black, Carlos Vargas-Irwin, Matthew Fellows, John P Donoghue.   

Abstract

The analysis of action potentials, or "spikes," is central to systems neuroscience research. Spikes are typically identified from raw waveforms manually for off-line analysis or automatically by human-configured algorithms for on-line applications. The variability of manual spike "sorting" is studied and its implications for neural prostheses discussed. Waveforms were recorded using a micro-electrode array and were used to construct a statistically similar synthetic dataset. Results showed wide variability in the number of neurons and spikes detected in real data. Additionally, average error rates of 23% false positive and 30% false negative were found for synthetic data.

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Year:  2004        PMID: 15188858     DOI: 10.1109/TBME.2004.826677

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  34 in total

1.  Measuring the quality of neuronal identification in ensemble recordings.

Authors:  Samuel A Neymotin; William W Lytton; Andrey V Olypher; André A Fenton
Journal:  J Neurosci       Date:  2011-11-09       Impact factor: 6.167

2.  Robustness of the significance of spike synchrony with respect to sorting errors.

Authors:  Antonio Pazienti; Sonja Grün
Journal:  J Comput Neurosci       Date:  2006-08-14       Impact factor: 1.621

3.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

4.  Receptive field focus of visual area V4 neurons determines responses to illusory surfaces.

Authors:  Michele A Cox; Michael C Schmid; Andrew J Peters; Richard C Saunders; David A Leopold; Alexander Maier
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-01       Impact factor: 11.205

5.  Single-unit stability using chronically implanted multielectrode arrays.

Authors:  Adam S Dickey; Aaron Suminski; Yali Amit; Nicholas G Hatsopoulos
Journal:  J Neurophysiol       Date:  2009-06-17       Impact factor: 2.714

6.  Non-causal spike filtering improves decoding of movement intention for intracortical BCIs.

Authors:  Nicolas Y Masse; Beata Jarosiewicz; John D Simeral; Daniel Bacher; Sergey D Stavisky; Sydney S Cash; Erin M Oakley; Etsub Berhanu; Emad Eskandar; Gerhard Friehs; Leigh R Hochberg; John P Donoghue
Journal:  J Neurosci Methods       Date:  2014-08-13       Impact factor: 2.390

7.  Reprint of "Non-causal spike filtering improves decoding of movement intention for intracortical BCIs".

Authors:  Nicolas Y Masse; Beata Jarosiewicz; John D Simeral; Daniel Bacher; Sergey D Stavisky; Sydney S Cash; Erin M Oakley; Etsub Berhanu; Emad Eskandar; Gerhard Friehs; Leigh R Hochberg; John P Donoghue
Journal:  J Neurosci Methods       Date:  2015-02-11       Impact factor: 2.390

Review 8.  Continuing progress of spike sorting in the era of big data.

Authors:  David Carlson; Lawrence Carin
Journal:  Curr Opin Neurobiol       Date:  2019-03-08       Impact factor: 6.627

9.  A neural network for online spike classification that improves decoding accuracy.

Authors:  Deepa Issar; Ryan C Williamson; Sanjeev B Khanna; Matthew A Smith
Journal:  J Neurophysiol       Date:  2020-02-26       Impact factor: 2.714

10.  An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats.

Authors:  Thomas Zhihao Luo; Adrian Gopnik Bondy; Diksha Gupta; Verity Alexander Elliott; Charles D Kopec; Carlos D Brody
Journal:  Elife       Date:  2020-10-22       Impact factor: 8.140

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