Literature DB >> 25128256

Non-causal spike filtering improves decoding of movement intention for intracortical BCIs.

Nicolas Y Masse1, Beata Jarosiewicz2, John D Simeral3, Daniel Bacher4, Sergey D Stavisky5, Sydney S Cash6, Erin M Oakley7, Etsub Berhanu7, Emad Eskandar8, Gerhard Friehs9, Leigh R Hochberg10, John P Donoghue11.   

Abstract

BACKGROUND: Multiple types of neural signals are available for controlling assistive devices through brain-computer interfaces (BCIs). Intracortically recorded spiking neural signals are attractive for BCIs because they can in principle provide greater fidelity of encoded information compared to electrocorticographic (ECoG) signals and electroencephalograms (EEGs). Recent reports show that the information content of these spiking neural signals can be reliably extracted simply by causally band-pass filtering the recorded extracellular voltage signals and then applying a spike detection threshold, without relying on "sorting" action potentials. NEW
METHOD: We show that replacing the causal filter with an equivalent non-causal filter increases the information content extracted from the extracellular spiking signal and improves decoding of intended movement direction. This method can be used for real-time BCI applications by using a 4ms lag between recording and filtering neural signals.
RESULTS: Across 18 sessions from two people with tetraplegia enrolled in the BrainGate2 pilot clinical trial, we found that threshold crossing events extracted using this non-causal filtering method were significantly more informative of each participant's intended cursor kinematics compared to threshold crossing events derived from causally filtered signals. This new method decreased the mean angular error between the intended and decoded cursor direction by 9.7° for participant S3, who was implanted 5.4 years prior to this study, and by 3.5° for participant T2, who was implanted 3 months prior to this study.
CONCLUSIONS: Non-causally filtering neural signals prior to extracting threshold crossing events may be a simple yet effective way to condition intracortically recorded neural activity for direct control of external devices through BCIs.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Brain–computer interface; Microelectrode array; Neural decoding; Non-causal filter; Spike sorting; Threshold crossing

Mesh:

Year:  2014        PMID: 25128256      PMCID: PMC4169749          DOI: 10.1016/j.jneumeth.2014.08.004

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  27 in total

1.  On the variability of manual spike sorting.

Authors:  Frank Wood; Michael J Black; Carlos Vargas-Irwin; Matthew Fellows; John P Donoghue
Journal:  IEEE Trans Biomed Eng       Date:  2004-06       Impact factor: 4.538

2.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

3.  Spike sorting.

Authors:  Rodrigo Quian Quiroga
Journal:  Curr Biol       Date:  2012-01-24       Impact factor: 10.834

4.  Spike detection using the continuous wavelet transform.

Authors:  Zoran Nenadic; Joel W Burdick
Journal:  IEEE Trans Biomed Eng       Date:  2005-01       Impact factor: 4.538

5.  An extensible infrastructure for fully automated spike sorting during online experiments.

Authors:  Gopal Santhanam; Maneesh Sahani; Stephen Ryu; Krishna Shenoy
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

6.  Advantages of closed-loop calibration in intracortical brain-computer interfaces for people with tetraplegia.

Authors:  Beata Jarosiewicz; Nicolas Y Masse; Daniel Bacher; Sydney S Cash; Emad Eskandar; Gerhard Friehs; John P Donoghue; Leigh R Hochberg
Journal:  J Neural Eng       Date:  2013-07-10       Impact factor: 5.379

Review 7.  Challenges and opportunities for next-generation intracortically based neural prostheses.

Authors:  Vikash Gilja; Cindy A Chestek; Ilka Diester; Jaimie M Henderson; Karl Deisseroth; Krishna V Shenoy
Journal:  IEEE Trans Biomed Eng       Date:  2011-01-20       Impact factor: 4.538

8.  Instant neural control of a movement signal.

Authors:  Mijail D Serruya; Nicholas G Hatsopoulos; Liam Paninski; Matthew R Fellows; John P Donoghue
Journal:  Nature       Date:  2002-03-14       Impact factor: 49.962

9.  What is the real shape of extracellular spikes?

Authors:  R Quian Quiroga
Journal:  J Neurosci Methods       Date:  2008-10-14       Impact factor: 2.390

10.  Reach and grasp by people with tetraplegia using a neurally controlled robotic arm.

Authors:  Leigh R Hochberg; Daniel Bacher; Beata Jarosiewicz; Nicolas Y Masse; John D Simeral; Joern Vogel; Sami Haddadin; Jie Liu; Sydney S Cash; Patrick van der Smagt; John P Donoghue
Journal:  Nature       Date:  2012-05-16       Impact factor: 49.962

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  14 in total

1.  Speech-related dorsal motor cortex activity does not interfere with iBCI cursor control.

Authors:  Sergey D Stavisky; Francis R Willett; Donald T Avansino; Leigh R Hochberg; Krishna V Shenoy; Jaimie M Henderson
Journal:  J Neural Eng       Date:  2020-02-05       Impact factor: 5.379

Review 2.  The emergence of single neurons in clinical neurology.

Authors:  Sydney S Cash; Leigh R Hochberg
Journal:  Neuron       Date:  2015-04-08       Impact factor: 17.173

3.  A neural network for online spike classification that improves decoding accuracy.

Authors:  Deepa Issar; Ryan C Williamson; Sanjeev B Khanna; Matthew A Smith
Journal:  J Neurophysiol       Date:  2020-02-26       Impact factor: 2.714

4.  Retrospectively supervised click decoder calibration for self-calibrating point-and-click brain-computer interfaces.

Authors:  Beata Jarosiewicz; Anish A Sarma; Jad Saab; Brian Franco; Sydney S Cash; Emad N Eskandar; Leigh R Hochberg
Journal:  J Physiol Paris       Date:  2017-03-08

5.  Characterisation and functional mapping of surface potentials in the rat dorsal column nuclei.

Authors:  Alastair J Loutit; Ted Maddess; Stephen J Redmond; John W Morley; Greg J Stuart; Jason R Potas
Journal:  J Physiol       Date:  2017-04-25       Impact factor: 5.182

6.  Neural Point-and-Click Communication by a Person With Incomplete Locked-In Syndrome.

Authors:  Daniel Bacher; Beata Jarosiewicz; Nicolas Y Masse; Sergey D Stavisky; John D Simeral; Katherine Newell; Erin M Oakley; Sydney S Cash; Gerhard Friehs; Leigh R Hochberg
Journal:  Neurorehabil Neural Repair       Date:  2014-11-10       Impact factor: 3.919

Review 7.  The science and engineering behind sensitized brain-controlled bionic hands.

Authors:  Chethan Pandarinath; Sliman J Bensmaia
Journal:  Physiol Rev       Date:  2021-09-20       Impact factor: 37.312

8.  Clinical translation of a high-performance neural prosthesis.

Authors:  Vikash Gilja; Chethan Pandarinath; Christine H Blabe; Paul Nuyujukian; John D Simeral; Anish A Sarma; Brittany L Sorice; János A Perge; Beata Jarosiewicz; Leigh R Hochberg; Krishna V Shenoy; Jaimie M Henderson
Journal:  Nat Med       Date:  2015-09-28       Impact factor: 53.440

9.  Virtual typing by people with tetraplegia using a self-calibrating intracortical brain-computer interface.

Authors:  Beata Jarosiewicz; Anish A Sarma; Daniel Bacher; Nicolas Y Masse; John D Simeral; Brittany Sorice; Erin M Oakley; Christine Blabe; Chethan Pandarinath; Vikash Gilja; Sydney S Cash; Emad N Eskandar; Gerhard Friehs; Jaimie M Henderson; Krishna V Shenoy; John P Donoghue; Leigh R Hochberg
Journal:  Sci Transl Med       Date:  2015-11-11       Impact factor: 17.956

10.  Neural ensemble dynamics in dorsal motor cortex during speech in people with paralysis.

Authors:  Krishna V Shenoy; Jaimie M Henderson; Sergey D Stavisky; Francis R Willett; Guy H Wilson; Brian A Murphy; Paymon Rezaii; Donald T Avansino; William D Memberg; Jonathan P Miller; Robert F Kirsch; Leigh R Hochberg; A Bolu Ajiboye; Shaul Druckmann
Journal:  Elife       Date:  2019-12-10       Impact factor: 8.140

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