Literature DB >> 15173564

Arabidopsis MPSS. An online resource for quantitative expression analysis.

Blake C Meyers1, David K Lee, Tam H Vu, Shivakundan Singh Tej, Steve B Edberg, Marta Matvienko, Larry D Tindell.   

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Year:  2004        PMID： 15173564      PMCID： PMC514116          DOI： 10.1104/pp.104.039495

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  12 in total

1.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

2.  In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs.

Authors:  S Brenner; S R Williams; E H Vermaas; T Storck; K Moon; C McCollum; J I Mao; S Luo; J J Kirchner; S Eletr; R B DuBridge; T Burcham; G Albrecht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

3.  SAGEmap: a public gene expression resource.

Authors:  A E Lash; C M Tolstoshev; L Wagner; G D Schuler; R L Strausberg; G J Riggins; S F Altschul
Journal:  Genome Res       Date:  2000-07       Impact factor: 9.043

4.  Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing.

Authors:  C Victor Jongeneel; Christian Iseli; Brian J Stevenson; Gregory J Riggins; Anita Lal; Alan Mackay; Robert A Harris; Michael J O'Hare; A Munro Neville; Andrew J G Simpson; Robert L Strausberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-01       Impact factor: 11.205

5.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.

Authors:  Brian J Haas; Arthur L Delcher; Stephen M Mount; Jennifer R Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen White
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

6.  The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Authors:  Blake C Meyers; Shivakundan Singh Tej; Tam H Vu; Christian D Haudenschild; Vikas Agrawal; Steve B Edberg; Hassan Ghazal; Shannon Decola
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

7.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

8.  Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Authors:  C A Ball; H Jin; G Sherlock; S Weng; J C Matese; R Andrada; G Binkley; K Dolinski; S S Dwight; M A Harris; L Issel-Tarver; M Schroeder; D Botstein; J M Cherry
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing.

Authors:  Blake C Meyers; Tam H Vu; Shivakundan Singh Tej; Hassan Ghazal; Marta Matvienko; Vikas Agrawal; Jianchang Ning; Christian D Haudenschild
Journal:  Nat Biotechnol       Date:  2004-07-11       Impact factor: 54.908

10.  Expression monitoring by hybridization to high-density oligonucleotide arrays.

Authors:  D J Lockhart; H Dong; M C Byrne; M T Follettie; M V Gallo; M S Chee; M Mittmann; C Wang; M Kobayashi; H Horton; E L Brown
Journal:  Nat Biotechnol       Date:  1996-12       Impact factor: 54.908
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  55 in total

Review 1.  Methods for transcriptional profiling in plants. Be fruitful and replicate.

Authors:  Blake C Meyers; David W Galbraith; Timothy Nelson; Vikas Agrawal
Journal:  Plant Physiol       Date:  2004-06-01       Impact factor: 8.340

2.  The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Authors:  Blake C Meyers; Shivakundan Singh Tej; Tam H Vu; Christian D Haudenschild; Vikas Agrawal; Steve B Edberg; Hassan Ghazal; Shannon Decola
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

3.  Selective acquisition and retention of genomic sequences by Pack-Mutator-like elements based on guanine-cytosine content and the breadth of expression.

Authors:  Ann A Ferguson; Dongyan Zhao; Ning Jiang
Journal:  Plant Physiol       Date:  2013-09-12       Impact factor: 8.340

4.  Substrate promiscuity of a rosmarinic acid synthase from lavender (Lavandula angustifolia L.).

Authors:  Christian Landmann; Stefanie Hücherig; Barbara Fink; Thomas Hoffmann; Daniela Dittlein; Heather A Coiner; Wilfried Schwab
Journal:  Planta       Date:  2011-03-22       Impact factor: 4.116

5.  The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism.

Authors:  Thomas Girke; Josh Lauricha; Hua Tran; Kenneth Keegstra; Natasha Raikhel
Journal:  Plant Physiol       Date:  2004-10       Impact factor: 8.340

6.  Maximizing the efficacy of SAGE analysis identifies novel transcripts in Arabidopsis.

Authors:  Stephen J Robinson; Dustin J Cram; Christopher T Lewis; Isobel A P Parkin
Journal:  Plant Physiol       Date:  2004-10       Impact factor: 8.340

7.  Expression profiling of the Arabidopsis ferric chelate reductase (FRO) gene family reveals differential regulation by iron and copper.

Authors:  Indrani Mukherjee; Nathan H Campbell; Joshua S Ash; Erin L Connolly
Journal:  Planta       Date:  2005-12-14       Impact factor: 4.116

8.  The maize root transcriptome by serial analysis of gene expression.

Authors:  V Poroyko; L G Hejlek; W G Spollen; G K Springer; H T Nguyen; R E Sharp; H J Bohnert
Journal:  Plant Physiol       Date:  2005-06-17       Impact factor: 8.340

9.  Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue.

Authors:  Mei Guo; Sean Yang; Mary Rupe; Bin Hu; David R Bickel; Lane Arthur; Oscar Smith
Journal:  Plant Mol Biol       Date:  2008-01-26       Impact factor: 4.076

10.  Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses.

Authors:  Justin W Walley; Dior R Kelley; Gergana Nestorova; David L Hirschberg; Katayoon Dehesh
Journal:  Plant Physiol       Date:  2009-12-02       Impact factor: 8.340
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