Literature DB >> 10899154

SAGEmap: a public gene expression resource.

A E Lash1, C M Tolstoshev, L Wagner, G D Schuler, R L Strausberg, G J Riggins, S F Altschul.   

Abstract

We have constructed a public gene expression data repository and online data access and analysis, WWW and FTP sites for serial analysis of gene expression (SAGE) data. The WWW and FTP components of this resource, SAGEmap, are located at http://www.ncbi.nlm.nih. gov/sage and ftp://ncbi.nlm.nih.gov/pub/sage, respectively. We herein describe SAGE data submission procedures, the construction and characteristics of SAGE tags to gene assignments, the derivation and use of a novel statistical test designed specifically for differential-type analyses of SAGE data, and the organization and use of this resource.

Mesh:

Year:  2000        PMID: 10899154      PMCID: PMC310889          DOI: 10.1101/gr.10.7.1051

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  13 in total

1.  Exploring the metabolic and genetic control of gene expression on a genomic scale.

Authors:  J L DeRisi; V R Iyer; P O Brown
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

2.  The significance of digital gene expression profiles.

Authors:  S Audic; J M Claverie
Journal:  Genome Res       Date:  1997-10       Impact factor: 9.043

3.  Generation and analysis of 280,000 human expressed sequence tags.

Authors:  L D Hillier; G Lennon; M Becker; M F Bonaldo; B Chiapelli; S Chissoe; N Dietrich; T DuBuque; A Favello; W Gish; M Hawkins; M Hultman; T Kucaba; M Lacy; M Le; N Le; E Mardis; B Moore; M Morris; J Parsons; C Prange; L Rifkin; T Rohlfing; K Schellenberg; M Bento Soares; F Tan; J Thierry-Meg; E Trevaskis; K Underwood; P Wohldman; R Waterston; R Wilson; M Marra
Journal:  Genome Res       Date:  1996-09       Impact factor: 9.043

4.  Toward the development of a gene index to the human genome: an assessment of the nature of high-throughput EST sequence data.

Authors:  J S Aaronson; B Eckman; R A Blevins; J A Borkowski; J Myerson; S Imran; K O Elliston
Journal:  Genome Res       Date:  1996-09       Impact factor: 9.043

5.  A model for p53-induced apoptosis.

Authors:  K Polyak; Y Xia; J L Zweier; K W Kinzler; B Vogelstein
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  New opportunities for uncovering the molecular basis of cancer.

Authors:  R L Strausberg; C A Dahl; R D Klausner
Journal:  Nat Genet       Date:  1997-04       Impact factor: 38.330

7.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

8.  dbEST--database for "expressed sequence tags".

Authors:  M S Boguski; T M Lowe; C M Tolstoshev
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

9.  A public database for gene expression in human cancers.

Authors:  A Lal; A E Lash; S F Altschul; V Velculescu; L Zhang; R E McLendon; M A Marra; C Prange; P J Morin; K Polyak; N Papadopoulos; B Vogelstein; K W Kinzler; R L Strausberg; G J Riggins
Journal:  Cancer Res       Date:  1999-11-01       Impact factor: 12.701

10.  Characterization of gene expression in resting and activated mast cells.

Authors:  H Chen; M Centola; S F Altschul; H Metzger
Journal:  J Exp Med       Date:  1998-11-02       Impact factor: 14.307

View more
  111 in total

1.  Identification and prevention of a GC content bias in SAGE libraries.

Authors:  E H Margulies; S L Kardia; J W Innis
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  A comparative molecular analysis of developing mouse forelimbs and hindlimbs using serial analysis of gene expression (SAGE).

Authors:  E H Margulies; S L Kardia; J W Innis
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

3.  The human genome browser at UCSC.

Authors:  W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

4.  Transcript identification by analysis of short sequence tags--influence of tag length, restriction site and transcript database.

Authors:  Per Unneberg; Anders Wennborg; Magnus Larsson
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

5.  An anatomy of normal and malignant gene expression.

Authors:  Kathy Boon; Elisson C Osorio; Susan F Greenhut; Carl F Schaefer; Jennifer Shoemaker; Kornelia Polyak; Patrice J Morin; Kenneth H Buetow; Robert L Strausberg; Sandro J De Souza; Gregory J Riggins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

6.  Computationally identifying novel NF-kappa B-regulated immune genes in the human genome.

Authors:  Rongxiang Liu; Richard C McEachin; David J States
Journal:  Genome Res       Date:  2003-03-12       Impact factor: 9.043

Review 7.  Genome informatics: current status and future prospects.

Authors:  Raimond L Winslow; Mark S Boguski
Journal:  Circ Res       Date:  2003-05-16       Impact factor: 17.367

8.  The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.

Authors:  Cécile Fizames; Stéphane Muños; Céline Cazettes; Philippe Nacry; Jossia Boucherez; Frédéric Gaymard; David Piquemal; Valérie Delorme; Thérèse Commes; Patrick Doumas; Richard Cooke; Jacques Marti; Hervé Sentenac; Alain Gojon
Journal:  Plant Physiol       Date:  2004-01       Impact factor: 8.340

9.  PGDB: a curated and integrated database of genes related to the prostate.

Authors:  Long-Cheng Li; Hong Zhao; Hiroaki Shiina; Christopher J Kane; Rajvir Dahiya
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

10.  The Mouse SAGE Site: database of public mouse SAGE libraries.

Authors:  Petr Divina; Jirí Forejt
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.