Literature DB >> 15172663

Genetic dissection of diseases: design and methods.

Josephine Hoh1, Jurg Ott.   

Abstract

The etiology of heritable diseases may be elucidated by localizing genes conferring susceptibility and by subsequent biological characterization of these genes. To localize genetic components for multifactorial traits, both hypothesis-driven candidate gene and hypothesis-free genome scan approaches have been applied. To date, only a handful of results have been reproduced in either a different cohort or model organisms. The integration of genetic approaches with high-throughput genomic techniques is very promising. Unfortunately, most genetic studies completely ignore strong nongenetic effects such as low education and poverty even though these factors are well-known to predict, for example, obesity. Thus, what are most needed in future research are statistical methods for discovering sets of susceptibility genes and environmental factors, as well as systematic verifications of the gene-environment-disease network.

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Year:  2004        PMID: 15172663     DOI: 10.1016/j.gde.2004.04.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  13 in total

Review 1.  Factors affecting statistical power in the detection of genetic association.

Authors:  Derek Gordon; Stephen J Finch
Journal:  J Clin Invest       Date:  2005-06       Impact factor: 14.808

2.  Genome-wide association studies: hypothesis-"free" or "engaged"?

Authors:  Georgios D Kitsios; Elias Zintzaras
Journal:  Transl Res       Date:  2009-07-29       Impact factor: 7.012

3.  Magnetic resonance imaging as a tool for in vivo and ex vivo anatomical phenotyping in experimental genetic models.

Authors:  Alain Pitiot; Zdenka Pausova; Malcolm Prior; Jennifer Perrin; Naomi Loyse; Tomás Paus
Journal:  Hum Brain Mapp       Date:  2007-06       Impact factor: 5.038

4.  Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error.

Authors:  Wonkuk Kim; Douglas Londono; Lisheng Zhou; Jinchuan Xing; Alejandro Q Nato; Anthony Musolf; Tara C Matise; Stephen J Finch; Derek Gordon
Journal:  Hum Hered       Date:  2013-04-11       Impact factor: 0.444

Review 5.  The chemokine network. II. On how polymorphisms and alternative splicing increase the number of molecular species and configure intricate patterns of disease susceptibility.

Authors:  R Colobran; R Pujol-Borrell; M P Armengol; M Juan
Journal:  Clin Exp Immunol       Date:  2007-10       Impact factor: 4.330

6.  No evidence of association or interaction between the IL4RA, IL4, and IL13 genes in type 1 diabetes.

Authors:  Lisa M Maier; Juliet Chapman; Joanna M M Howson; David G Clayton; Rebecca Pask; David P Strachan; Wendy L McArdle; Rebecca C J Twells; John A Todd
Journal:  Am J Hum Genet       Date:  2005-01-19       Impact factor: 11.025

Review 7.  A survey of data mining methods for linkage disequilibrium mapping.

Authors:  Päivi Onkamo; Hannu Toivonen
Journal:  Hum Genomics       Date:  2006-03       Impact factor: 4.639

8.  TDT-HET: a new transmission disequilibrium test that incorporates locus heterogeneity into the analysis of family-based association data.

Authors:  Douglas Londono; Steven Buyske; Stephen J Finch; Swarkar Sharma; Carol A Wise; Derek Gordon
Journal:  BMC Bioinformatics       Date:  2012-01-20       Impact factor: 3.169

9.  Preliminary molecular genetic analysis of the Receptor Interacting Protein 140 (RIP140) in women affected by endometriosis.

Authors:  Virginia Caballero; Rocío Ruiz; José Antonio Sainz; Marina Cruz; Miguel Angel López-Nevot; José Jorge Galán; Luis Miguel Real; Francisco de Castro; Vicente López-Villaverde; Agustín Ruiz
Journal:  J Exp Clin Assist Reprod       Date:  2005-08-30

10.  Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes.

Authors:  Nicki Tiffin; Euan Adie; Frances Turner; Han G Brunner; Marc A van Driel; Martin Oti; Nuria Lopez-Bigas; Christos Ouzounis; Carolina Perez-Iratxeta; Miguel A Andrade-Navarro; Adebowale Adeyemo; Mary Elizabeth Patti; Colin A M Semple; Winston Hide
Journal:  Nucleic Acids Res       Date:  2006-06-06       Impact factor: 16.971

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