| Literature DB >> 16131398 |
Virginia Caballero1, Rocío Ruiz, José Antonio Sainz, Marina Cruz, Miguel Angel López-Nevot, José Jorge Galán, Luis Miguel Real, Francisco de Castro, Vicente López-Villaverde, Agustín Ruiz.
Abstract
BACKGROUND: Endometriosis is a complex disease affecting 10-15% of women at reproductive age. Very few genes are known to be altered in this pathology. RIP140 protein is an important cofactor of oestrogen receptor and many other nuclear receptors. Targeting disruption experiments of nrip1 gene in mice have demonstrated that nuclear receptor interacting protein 1 gene (nrip1), the gene encoding for rip140 protein, is essential for female fertility. Specifically, mice null for nrip1 gene are viable, but females are infertile because of complete failure of mature follicles to release oocytes at ovulation stage. The ovarian phenotype observed in mice devoid of rip140 closely resembles the luteinized unruptured follicle (LUF) syndrome that is observed in a high proportion of women affected of endometriosis or idiopathic infertility. Here we present a preliminary work that analyses the role of NRIP1 gene in humans.Entities:
Year: 2005 PMID: 16131398 PMCID: PMC1242355 DOI: 10.1186/1743-1050-2-11
Source DB: PubMed Journal: J Exp Clin Assist Reprod ISSN: 1743-1050
Amplification primer sequences and PCR product size. NRIP1 is a monoexonic gene. We designed eight overlapping amplicons to cover the entire coding sequence of this gene.
| 1F | TTCTAGTTCTGCCTCCTTAAC | 554 |
| 1R | ACATTTCTGGCAGTGCATTTC | |
| 2F | GATCAGGTACTGCCGTTGA | 528 |
| 2R | CGAATCTTCCTGATGTGACT | |
| 3F | GTGCTATGGTGTTGCATCAAG | 572 |
| 3R | TGCAGGTTATAAGAACTCACTGG | |
| 4F | CATCATCAAGCAAACTGATGGC | 577 |
| 4R | AGCCCTCAGGGAGTACACAA | |
| 5F | CTTCAATTGCTACTTGGCCAT | 582 |
| 5R | GTAGTCAACCAACAGGTCCT | |
| 6F | CTGGAAACACAGATAAACCGATAGG | 584 |
| 6R | TGGCACTTCTAGAATCAAAG | |
| 7F | AGATAGTTACCTGGCAGATG | 572 |
| 7R | TCCTACTTTCCCTGAGCACT | |
| 8F | CAGTTGCATGGATAACAGGA | 645 |
| 8R | GTATTGGTTACTGGTGATG |
Anchor and Sensor probes sequences employed for coding Single Nucleotide Polymorphism (cSNP) analysis using Fluorescence Resonance Energy Transfer (FRET) technology.
| Gly75Gly | 75-ANCHOR | AGTAATGGTCCAGTTCTCAATACAC – F |
| 75-SENSOR | Cy5 – TACATATCAGGGGTCTGGC – Ph | |
| His221Arg | 221-ANCHOR | Cy5 – AGTGGAACAAAGGTCATGAGTGAAC – Ph |
| 221-SENSOR | TCTCCTCATCATGTTGGACA – F | |
| Ile441Val | 448-ANCHOR | TATTCCAACTGTGTTCCCATAGACT – F |
| Arg448Gly | 448-SENSOR | Cy5 – GTCTTGCAAACACCGAACTG – Ph |
| Ser803Leu | 803-ANCHOR | GCGCACCTGCCTTACCAGTGTCCCGA – F |
| 803-SENSOR | Cy5-GACTTTAAATCGGAGCCTGTT – Ph | |
| Val1079Phe | 1079-ANCHOR | Cy5 – CGAGAAACACAAGACAAGGACATTT – Ph |
| 1079-SENSOR | GGAGGCAATTCTGTTACCAG – F |
Nomenclature: F: Fluoresceine, Ph: Phosphate.
Figure 1Detection of germ line variants in NRIP1 in patients with severe endometriosis. A) Spectrofluorimetric analysis of NRIP1 gene using real-time PCR. Analysis of the fluorescence measured during melting curve determination in the LightCycler (Roche Applied Science). Each allele has a specific melting point and all alleles are represented by its specific nucleotide change with the exception of Ile441Val and Arg448Gly polymorphisms. Nt c.512 G->A (Gly75Gly, melting points, Allele G: 62°C; Allele A: 57°C). Nt c.949 A->G (His221Arg, melting points, Allele A 61°C; Allele G: 56°C). Nt c.1608 A->G (Ile441Val) and Nt c.1629 C->G (Arg448Gly) (melting points, Allele Val441: 59°C; Allele Gly448: 56°C; wild type: 63°C). Nt c.2695 C->T (Ser803Leu, melting points, Allele C: 61°C; Allele T: 55°C). Nt c.3522 G->T (Val1079Phe, melting points, Allele G: 62°C; Allele T: 54°C). B) Sequence conservation and location of mutations in the RIP-140 protein. Black shading indicates the position of mutations. LXXLL motifs responsible for ligand independent interaction with Retinoid Acid Receptor (RAR) and Retinoid X Receptor (RXR) are in bold and underlyned. Signal peptide is depicted in blue, Carboxyl terminal binding protein (CTBP) and RAR interacting motifs are in red and green respectively. Low complexity regions are shown in grey.
Summary of DNA variants observed within the coding sequence of the NRIP1 gene.
| Nt c.512 G->A | None [Gly75] (ggg to gga) | rs2229741 | 15/40 | 57/118 | 129/282 | Common polymorphism |
| Nt c.949 A->G | His221Arg (cat to cgt) | - | 1/40 | 1/118 | 3/282 | Common polymorphism |
| Nt c.1608 A->G | Ile441Val (ata to gta) | - | 0/20 | 0/118 | 4/282 | Common polymorphism |
| Nt c.1629 C->G | Arg448Gly (cga to gga) | rs2229742 | 9/40 | 16/118 | 19/282 | Common polymorphism |
| Nt c.2695 C->T | Ser803Leu (tcg to ttg) | - | 2/40 | 3/118 | 10/282 | Common polymorphism |
| Nt c.3522 G->T | Val1079Phe (gtt to ttt) | - | 1/40 | 1/118 | 0/282 | Rare Variant/Mutation |
*In accordance with genbank number NM_003489.
** dbSNP: the Single Nucleotide Polymorphism Database at the National Centre for Biotechnology Information (NCBI)
Association studies of common DNA variants of the NRIP1 gene in relation to human endometriosis.
| Gly75Gly (ggg to gga) | aa | 15 | 19 | 9 | 28 | P = 0.34 (Heterozygous test) |
| ag | 27 | 46 | 27 | 73 | ||
| gg | 17 | 28 | 11 | 39 | ||
| Arg448Gly (cga to gga) | cc | 44 | 83 | 40 | 123 | P = 0.027 (Allele positivity test) |
| cg | 14 | 10 | 7 | 17 | ||
| gg | 1 | 1 | 0 | 1 | ||
| Ser803Leu (tcg to ttg) | cc | 56 | 85 | 46 | 130 | P = 0.59 (Armitage's trend test) |
| ct | 3 | 9 | 1 | 10 | ||
| tt | 0 | 0 | 0 | 0 |
*Compares patients versus merged controls. Best p value employing tests for genetic association according to Sasieni (1997). Ile441Val and His221Arg are not analyzed due to small or null sample size in endometriosis samples.