Literature DB >> 15164270

The soluble [NiFe]-hydrogenase from Ralstonia eutropha contains four cyanides in its active site, one of which is responsible for the insensitivity towards oxygen.

Eddy Van der Linden1, Tanja Burgdorf, Michael Bernhard, Boris Bleijlevens, Bärbel Friedrich, Simon P J Albracht.   

Abstract

Infrared spectra of (15)N-enriched preparations of the soluble cytoplasmic NAD(+)-reducing [NiFe]-hydrogenase from Ralstonia eutropha are presented. These spectra, together with chemical analyses, show that the Ni-Fe active site contains four cyanide groups and one carbon monoxide molecule. It is proposed that the active site is a (RS)(2)(CN)Ni(micro-RS)(2)Fe(CN)(3)(CO) centre (R=Cys) and that H(2) activation solely takes place on nickel. One of the two FMN groups (FMN-a) in the enzyme can be reversibly released upon reduction of the enzyme. It is now reported that at longer times also one of the cyanide groups, the one proposed to be bound to the nickel atom, could be removed from the enzyme. This process was irreversible and induced the inhibition of the enzyme activity by oxygen; the enzyme remained insensitive to carbon monoxide. The Ni-Fe active site was EPR undetectable under all conditions tested. It is concluded that the Ni-bound cyanide group is responsible for the oxygen insensitivity of the enzyme.

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Year:  2004        PMID: 15164270     DOI: 10.1007/s00775-004-0555-y

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  42 in total

Review 1.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

2.  The H2 sensor of Ralstonia eutropha. Biochemical characteristics, spectroscopic properties, and its interaction with a histidine protein kinase.

Authors:  M Bernhard; T Buhrke; B Bleijlevens; A L De Lacey; V M Fernandez; S P Albracht; B Friedrich
Journal:  J Biol Chem       Date:  2001-02-16       Impact factor: 5.157

3.  Gas access to the active site of Ni-Fe hydrogenases probed by X-ray crystallography and molecular dynamics.

Authors:  Y Montet; P Amara; A Volbeda; X Vernede; E C Hatchikian; M J Field; M Frey; J C Fontecilla-Camps
Journal:  Nat Struct Biol       Date:  1997-07

4.  Isolation and immunological characterization of the four non-identical subunits of the soluble NAD-linked hydrogenase from Alcaligenes eutrophus H16.

Authors:  K Schneider; B Piechulla
Journal:  Biochimie       Date:  1986-01       Impact factor: 4.079

5.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  The Alcaligenes eutrophus H16 hoxX gene participates in hydrogenase regulation.

Authors:  O Lenz; E Schwartz; J Dernedde; M Eitinger; B Friedrich
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

7.  Quantitative amino acid analysis of bovine NADH:ubiquinone oxidoreductase (Complex I) and related enzymes. Consequences for the number of prosthetic groups.

Authors:  Simon P J Albracht; Eddy van der Linden; Bart W Faber
Journal:  Biochim Biophys Acta       Date:  2003-03-06

8.  Selective release and function of one of the two FMN groups in the cytoplasmic NAD+-reducing [NiFe]-hydrogenase from Ralstonia eutropha.

Authors:  Eddy van der Linden; Bart W Faber; Boris Bleijlevens; Tanja Burgdorf; Michael Bernhard; Bärbel Friedrich; Simon P J Albracht
Journal:  Eur J Biochem       Date:  2004-02

9.  hyp gene products in Alcaligenes eutrophus are part of a hydrogenase-maturation system.

Authors:  J Dernedde; T Eitinger; N Patenge; B Friedrich
Journal:  Eur J Biochem       Date:  1996-01-15

10.  [3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis.

Authors:  M Rousset; Y Montet; B Guigliarelli; N Forget; M Asso; P Bertrand; J C Fontecilla-Camps; E C Hatchikian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

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  11 in total

1.  The active site of the [FeFe]-hydrogenase from Desulfovibrio desulfuricans. II. Redox properties, light sensitivity and CO-ligand exchange as observed by infrared spectroscopy.

Authors:  Winfried Roseboom; Antonio L De Lacey; Victor M Fernandez; E Claude Hatchikian; Simon P J Albracht
Journal:  J Biol Inorg Chem       Date:  2005-12-02       Impact factor: 3.358

2.  An improved purification procedure for the soluble [NiFe]-hydrogenase of Ralstonia eutropha: new insights into its (in)stability and spectroscopic properties.

Authors:  Eddy van der Linden; Tanja Burgdorf; Antonio L de Lacey; Thorsten Buhrke; Marcel Scholte; Victor M Fernandez; Bärbel Friedrich; Simon P J Albracht
Journal:  J Biol Inorg Chem       Date:  2006-01-18       Impact factor: 3.358

3.  The soluble NAD+-Reducing [NiFe]-hydrogenase from Ralstonia eutropha H16 consists of six subunits and can be specifically activated by NADPH.

Authors:  Tanja Burgdorf; Eddy van der Linden; Michael Bernhard; Qing Yuan Yin; Jaap W Back; Aloysius F Hartog; Anton O Muijsers; Chris G de Koster; Simon P J Albracht; Bärbel Friedrich
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

4.  Characterization of a cyanobacterial-like uptake [NiFe] hydrogenase: EPR and FTIR spectroscopic studies of the enzyme from Acidithiobacillus ferrooxidans.

Authors:  Olga Schröder; Boris Bleijlevens; Thyra E de Jongh; Zhujun Chen; Tianshu Li; Jörg Fischer; Jochen Förster; Cornelius G Friedrich; Kimberly A Bagley; Simon P J Albracht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2006-11-03       Impact factor: 3.358

5.  Coordination chemistry of [HFe(CN)(2)(CO)(3)](-) and its derivatives: toward a model for the iron subsite of the [NiFe]-hydrogenases.

Authors:  C Matthew Whaley; Thomas B Rauchfuss; Scott R Wilson
Journal:  Inorg Chem       Date:  2009-05-18       Impact factor: 5.165

6.  Enzymatic and spectroscopic properties of a thermostable [NiFe]‑hydrogenase performing H2-driven NAD+-reduction in the presence of O2.

Authors:  Janina Preissler; Stefan Wahlefeld; Christian Lorent; Christian Teutloff; Marius Horch; Lars Lauterbach; Stephen P Cramer; Ingo Zebger; Oliver Lenz
Journal:  Biochim Biophys Acta Bioenerg       Date:  2017-09-29       Impact factor: 3.991

7.  Overexpression, isolation, and spectroscopic characterization of the bidirectional [NiFe] hydrogenase from Synechocystis sp. PCC 6803.

Authors:  Frauke Germer; Ingo Zebger; Miguel Saggu; Friedhelm Lendzian; Rüdiger Schulz; Jens Appel
Journal:  J Biol Chem       Date:  2009-09-28       Impact factor: 5.157

8.  Spectroscopic insights into the oxygen-tolerant membrane-associated [NiFe] hydrogenase of Ralstonia eutropha H16.

Authors:  Miguel Saggu; Ingo Zebger; Marcus Ludwig; Oliver Lenz; Bärbel Friedrich; Peter Hildebrandt; Friedhelm Lendzian
Journal:  J Biol Chem       Date:  2009-03-20       Impact factor: 5.157

9.  Catalytic properties of the isolated diaphorase fragment of the NAD-reducing [NiFe]-hydrogenase from Ralstonia eutropha.

Authors:  Lars Lauterbach; Zulkifli Idris; Kylie A Vincent; Oliver Lenz
Journal:  PLoS One       Date:  2011-10-10       Impact factor: 3.240

10.  An innovative cloning platform enables large-scale production and maturation of an oxygen-tolerant [NiFe]-hydrogenase from Cupriavidus necator in Escherichia coli.

Authors:  Johannes Schiffels; Olaf Pinkenburg; Maximilian Schelden; El-Hussiny A A Aboulnaga; Marcus E M Baumann; Thorsten Selmer
Journal:  PLoS One       Date:  2013-07-05       Impact factor: 3.240

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