Literature DB >> 16323019

The active site of the [FeFe]-hydrogenase from Desulfovibrio desulfuricans. II. Redox properties, light sensitivity and CO-ligand exchange as observed by infrared spectroscopy.

Winfried Roseboom1, Antonio L De Lacey, Victor M Fernandez, E Claude Hatchikian, Simon P J Albracht.   

Abstract

In [FeFe]-hydrogenases, the H cluster (hydrogen-activating cluster) contains a di-iron centre ([2Fe]H subcluster, a (L)(CO)(CN)Fe(mu-RS2)(mu-CO)Fe(CysS)(CO)(CN) group) covalently attached to a cubane iron-sulphur cluster ([4Fe-4S]H subcluster). The Cys-thiol functions as the link between one iron (called Fe1) of the [2Fe]H subcluster and one iron of the cubane subcluster. The other iron in the [2Fe]H subcluster is called Fe2. The light sensitivity of the Desulfovibrio desulfuricans enzyme in a variety of states has been studied with infrared (IR) spectroscopy. The aerobic inactive enzyme (H(inact) state) and the CO-inhibited active form (H(ox)-CO state) were stable in light. Illumination of the H(ox) state led to a kind of cannibalization; in some enzyme molecules the H cluster was destroyed and the released CO was captured by the H clusters in other molecules to form the light-stable H(ox)-CO state. Illumination of active enzyme under 13CO resulted in the complete exchange of the two intrinsic COs bound to Fe2. At cryogenic temperatures, light induced the photodissociation of the extrinsic CO and the bridging CO of the enzyme in the H(ox)-CO state. Electrochemical redox titrations showed that the enzyme in the H(inact) state converts to the transition state (H(trans)) in a reversible one-electron redox step (E (m, pH 7) = -75 mV). IR spectra demonstrate that the added redox equivalent not only affects the [4Fe-4S]H subcluster, but also the di-iron centre. Enzyme in the H(trans) state reacts with extrinsic CO, which binds to Fe2. The H(trans) state converts irreversibly into the H(ox) state in a redox-dependent reaction most likely involving two electrons (E (m, pH 7) = -261 mV). These electrons do not end up on any of the six Fe atoms of the H cluster; the possible destiny of the two redox equivalents is discussed. An additional reversible one-electron redox reaction leads to the H(red) state (E (m, pH 7) = -354 mV), where both Fe atoms of the [2Fe]H subcluster have the same formal oxidation state. The possible oxidation states of Fe1 and Fe2 in the various enzyme states are discussed. Low redox potentials (below -500 mV) lead to destruction of the [2Fe]H subcluster.

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Year:  2005        PMID: 16323019     DOI: 10.1007/s00775-005-0040-2

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  46 in total

Review 1.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

Review 2.  The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio.

Authors:  G Fauque; H D Peck; J J Moura; B H Huynh; Y Berlier; D V DerVartanian; M Teixeira; A E Przybyla; P A Lespinat; I Moura
Journal:  FEMS Microbiol Rev       Date:  1988-12       Impact factor: 16.408

3.  Infrared studies of the CO-inhibited form of the Fe-only hydrogenase from Clostridium pasteurianum I: examination of its light sensitivity at cryogenic temperatures.

Authors:  Zhujun Chen; Brian J Lemon; Shan Huang; Derrick J Swartz; John W Peters; Kimberly A Bagley
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

Review 4.  [NiFe]-hydrogenases: spectroscopic and electrochemical definition of reactions and intermediates.

Authors:  Fraser A Armstrong; Simon P J Albracht
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2005-04-15       Impact factor: 4.226

5.  Influence of the redox potential on the activity of Clostridium pasteurianum and Chromatium hydrogenases.

Authors:  V M Fernandez; R Munilla; A Ballesteros
Journal:  Arch Biochem Biophys       Date:  1982-04-15       Impact factor: 4.013

6.  Separation of hydrogenase from intact cells of Desulfovibrio vulgaris. Purification and properties.

Authors:  H M van der Westen; S G Mayhew; C Veeger
Journal:  FEBS Lett       Date:  1978-02-01       Impact factor: 4.124

7.  Coordination sphere flexibility of active-site models for Fe-only hydrogenase: studies in intra- and intermolecular diatomic ligand exchange.

Authors:  E J Lyon; I P Georgakaki; J H Reibenspies; M Y Darensbourg
Journal:  J Am Chem Soc       Date:  2001-04-11       Impact factor: 15.419

Review 8.  Protein-sulfenic acids: diverse roles for an unlikely player in enzyme catalysis and redox regulation.

Authors:  A Claiborne; J I Yeh; T C Mallett; J Luba; E J Crane; V Charrier; D Parsonage
Journal:  Biochemistry       Date:  1999-11-23       Impact factor: 3.162

9.  EPR-detectable redox centers of the periplasmic hydrogenase from Desulfovibrio vulgaris.

Authors:  D S Patil; J J Moura; S H He; M Teixeira; B C Prickril; D V DerVartanian; H D Peck; J LeGall; B H Huynh
Journal:  J Biol Chem       Date:  1988-12-15       Impact factor: 5.157

Review 10.  Molecular biology of microbial hydrogenases.

Authors:  P M Vignais; A Colbeau
Journal:  Curr Issues Mol Biol       Date:  2004-07       Impact factor: 2.081

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  48 in total

1.  Combining acid-base, redox and substrate binding functionalities to give a complete model for the [FeFe]-hydrogenase.

Authors:  James M Camara; Thomas B Rauchfuss
Journal:  Nat Chem       Date:  2011-10-30       Impact factor: 24.427

2.  O2 reactions at the six-iron active site (H-cluster) in [FeFe]-hydrogenase.

Authors:  Camilla Lambertz; Nils Leidel; Kajsa G V Havelius; Jens Noth; Petko Chernev; Martin Winkler; Thomas Happe; Michael Haumann
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

3.  Stepwise isotope editing of [FeFe]-hydrogenases exposes cofactor dynamics.

Authors:  Moritz Senger; Stefan Mebs; Jifu Duan; Florian Wittkamp; Ulf-Peter Apfel; Joachim Heberle; Michael Haumann; Sven Timo Stripp
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

4.  FTIR spectroelectrochemical characterization of the Ni-Fe-Se hydrogenase from Desulfovibrio vulgaris Hildenborough.

Authors:  Antonio L De Lacey; Cristina Gutiérrez-Sánchez; Víctor M Fernández; Isabel Pacheco; Inês A C Pereira
Journal:  J Biol Inorg Chem       Date:  2008-08-13       Impact factor: 3.358

5.  Spin distribution of the H-cluster in the H(ox)-CO state of the [FeFe] hydrogenase from Desulfovibrio desulfuricans: HYSCORE and ENDOR study of (14)N and (13)C nuclear interactions.

Authors:  Alexey Silakov; Brian Wenk; Eduard Reijerse; Simon P J Albracht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2008-11-15       Impact factor: 3.358

6.  The oxidative inactivation of FeFe hydrogenase reveals the flexibility of the H-cluster.

Authors:  Vincent Fourmond; Claudio Greco; Kateryna Sybirna; Carole Baffert; Po-Hung Wang; Pierre Ezanno; Marco Montefiori; Maurizio Bruschi; Isabelle Meynial-Salles; Philippe Soucaille; Jochen Blumberger; Hervé Bottin; Luca De Gioia; Christophe Léger
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

7.  Photolysis of Hi-CO Nitrogenase - Observation of a Plethora of Distinct CO Species using Infrared Spectroscopy.

Authors:  Lifen Yan; Christie H Dapper; Simon J George; Hongxin Wang; Devrani Mitra; Weibing Dong; William E Newton; Stephen P Cramer
Journal:  Eur J Inorg Chem       Date:  2011-03-28       Impact factor: 2.524

8.  Nuclear resonance vibrational spectroscopy and electron paramagnetic resonance spectroscopy of 57Fe-enriched [FeFe] hydrogenase indicate stepwise assembly of the H-cluster.

Authors:  Jon M Kuchenreuther; Yisong Guo; Hongxin Wang; William K Myers; Simon J George; Christine A Boyke; Yoshitaka Yoda; E Ercan Alp; Jiyong Zhao; R David Britt; James R Swartz; Stephen P Cramer
Journal:  Biochemistry       Date:  2013-01-24       Impact factor: 3.162

9.  Diiron dithiolato carbonyls related to the H(ox)CO state of [FeFe]-hydrogenase.

Authors:  Aaron K Justice; Mark J Nilges; Thomas B Rauchfuss; Scott R Wilson; Luca De Gioia; Giuseppe Zampella
Journal:  J Am Chem Soc       Date:  2008-03-15       Impact factor: 15.419

10.  High-yield expression of heterologous [FeFe] hydrogenases in Escherichia coli.

Authors:  Jon M Kuchenreuther; Celestine S Grady-Smith; Alyssa S Bingham; Simon J George; Stephen P Cramer; James R Swartz
Journal:  PLoS One       Date:  2010-11-24       Impact factor: 3.240

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