Literature DB >> 15155876

TILLING. Traditional mutagenesis meets functional genomics.

Steven Henikoff1, Bradley J Till, Luca Comai.   

Abstract

Most of the genes of an organism are known from sequence, but most of the phenotypes are obscure. Thus, reverse genetics has become an important goal for many biologists. However, reverse-genetic methodologies are not similarly applicable to all organisms. In the general strategy for reverse genetics that we call TILLING (for Targeting Induced Local Lesions in Genomes), traditional chemical mutagenesis is followed by high-throughput screening for point mutations. TILLING promises to be generally applicable. Furthermore, because TILLING does not involve transgenic modifications, it is attractive not only for functional genomics but also for agricultural applications. Here, we present an overview of the status of TILLING methodology, including Ecotilling, which entails detection of natural variation. We describe public TILLING efforts in Arabidopsis and other organisms, including maize (Zea mays) and zebrafish. We conclude that TILLING, a technology developed in plants, is rapidly being adopted in other systems.

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Year:  2004        PMID: 15155876      PMCID: PMC514099          DOI: 10.1104/pp.104.041061

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  22 in total

1.  Targeted recovery of mutations in Drosophila.

Authors:  A Bentley; B MacLennan; J Calvo; C R Dearolf
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Large-scale discovery of induced point mutations with high-throughput TILLING.

Authors:  Bradley J Till; Steven H Reynolds; Elizabeth A Greene; Christine A Codomo; Linda C Enns; Jessica E Johnson; Chris Burtner; Anthony R Odden; Kim Young; Nicholas E Taylor; Jorja G Henikoff; Luca Comai; Steven Henikoff
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

3.  Continuous, on-line DNA sequencing using a versatile infrared laser scanner/electrophoresis apparatus.

Authors:  L R Middendorf; J C Bruce; R C Bruce; R D Eckles; D L Grone; S C Roemer; G D Sloniker; D L Steffens; S L Sutter; J A Brumbaugh
Journal:  Electrophoresis       Date:  1992-08       Impact factor: 3.535

Review 4.  Single-nucleotide mutations for plant functional genomics.

Authors:  Steven Henikoff; Luca Comai
Journal:  Annu Rev Plant Biol       Date:  2003       Impact factor: 26.379

5.  Efficient target-selected mutagenesis in zebrafish.

Authors:  Erno Wienholds; Freek van Eeden; Marit Kosters; Josine Mudde; Ronald H A Plasterk; Edwin Cuppen
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

6.  Efficient discovery of DNA polymorphisms in natural populations by Ecotilling.

Authors:  Luca Comai; Kim Young; Bradley J Till; Steven H Reynolds; Elizabeth A Greene; Christine A Codomo; Linda C Enns; Jessica E Johnson; Chris Burtner; Anthony R Odden; Steven Henikoff
Journal:  Plant J       Date:  2004-03       Impact factor: 6.417

7.  Mutation detection using a novel plant endonuclease.

Authors:  C A Oleykowski; C R Bronson Mullins; A K Godwin; A T Yeung
Journal:  Nucleic Acids Res       Date:  1998-10-15       Impact factor: 16.971

8.  Targeted screening for induced mutations.

Authors:  C M McCallum; L Comai; E A Greene; S Henikoff
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

9.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

10.  The Wnt/beta-catenin pathway regulates cardiac valve formation.

Authors:  Adam F L Hurlstone; Anna-Pavlina G Haramis; Erno Wienholds; Harry Begthel; Jeroen Korving; Fredericus Van Eeden; Edwin Cuppen; Danica Zivkovic; Ronald H A Plasterk; Hans Clevers
Journal:  Nature       Date:  2003-10-09       Impact factor: 49.962

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  84 in total

1.  Mutation discovery by targeted genomic enrichment of multiplexed barcoded samples.

Authors:  Isaäc J Nijman; Michal Mokry; Ruben van Boxtel; Pim Toonen; Ewart de Bruijn; Edwin Cuppen
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

2.  SIFT missense predictions for genomes.

Authors:  Robert Vaser; Swarnaseetha Adusumalli; Sim Ngak Leng; Mile Sikic; Pauline C Ng
Journal:  Nat Protoc       Date:  2015-12-03       Impact factor: 13.491

3.  The power of chemical genomics to study the link between endomembrane system components and the gravitropic response.

Authors:  Marci Surpin; Marcela Rojas-Pierce; Clay Carter; Glenn R Hicks; Jacob Vasquez; Natasha V Raikhel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-16       Impact factor: 11.205

4.  Target-selected mutant screen by TILLING in Drosophila.

Authors:  Sylke Winkler; Anja Schwabedissen; Dana Backasch; Christian Bökel; Claudia Seidel; Stefanie Bönisch; Maximilian Fürthauer; Antje Kuhrs; Laura Cobreros; Michael Brand; Marcos González-Gaitán
Journal:  Genome Res       Date:  2005-05       Impact factor: 9.043

Review 5.  Plant cell wall polysaccharide biosynthesis: real progress in the identification of participating genes.

Authors:  Rachel A Burton; Naser Farrokhi; Antony Bacic; Geoffrey B Fincher
Journal:  Planta       Date:  2005-05-10       Impact factor: 4.116

Review 6.  TILLING moves beyond functional genomics into crop improvement.

Authors:  Ann J Slade; Vic C Knauf
Journal:  Transgenic Res       Date:  2005-04       Impact factor: 2.788

Review 7.  Genetic contributions to agricultural sustainability.

Authors:  Elizabeth S Dennis; Jeffrey Ellis; Allan Green; Danny Llewellyn; Matthew Morell; Linda Tabe; W J Peacock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-02-12       Impact factor: 6.237

8.  A bifunctional locus (BIO3-BIO1) required for biotin biosynthesis in Arabidopsis.

Authors:  Rosanna Muralla; Elve Chen; Colleen Sweeney; Jennifer A Gray; Allan Dickerman; Basil J Nikolau; David Meinke
Journal:  Plant Physiol       Date:  2007-11-09       Impact factor: 8.340

9.  Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1.

Authors:  Shunzong Ning; Ning Wang; Shun Sakuma; Mohammad Pourkheirandish; Jianzhong Wu; Takashi Matsumoto; Takato Koba; Takao Komatsuda
Journal:  Theor Appl Genet       Date:  2013-02-05       Impact factor: 5.699

10.  MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice.

Authors:  Tadzunu Suzuki; Mitsugu Eiguchi; Toshihiro Kumamaru; Hikaru Satoh; Hiroaki Matsusaka; Kazuki Moriguchi; Yasuo Nagato; Nori Kurata
Journal:  Mol Genet Genomics       Date:  2007-10-19       Impact factor: 3.291

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