Literature DB >> 15131208

Presence of bacterial phage-like DNA sequences in commercial Taq DNA polymerase reagents.

Tamara Newsome1, Bing-Jie Li, Nianxiang Zou, Shyh-Ching Lo.   

Abstract

Many studies have reported the presence of bacterial DNA contamination in commercial Taq DNA polymerase reagents. This is the first report of the presence of phage-like DNA sequences in certain commercial Taq DNA polymerase reagents. Precautions are needed when using amplification reagents with exogenous DNAs.

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Year:  2004        PMID: 15131208      PMCID: PMC404674          DOI: 10.1128/JCM.42.5.2264-2267.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  22 in total

1.  Contamination and sensitivity issues with a real-time universal 16S rRNA PCR.

Authors:  C E Corless; M Guiver; R Borrow; V Edwards-Jones; E B Kaczmarski; A J Fox
Journal:  J Clin Microbiol       Date:  2000-05       Impact factor: 5.948

2.  A simple method for elimination of unspecific amplifications in polymerase chain reaction.

Authors:  J K Sharma; V Gopalkrishna; B C Das
Journal:  Nucleic Acids Res       Date:  1992-11-25       Impact factor: 16.971

3.  Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction.

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Journal:  Appl Environ Microbiol       Date:  1992-10       Impact factor: 4.792

4.  DNase I treatment of Taq DNA polymerase for complete PCR decontamination.

Authors:  P A Rochelle; A J Weightman; J C Fry
Journal:  Biotechniques       Date:  1992-10       Impact factor: 1.993

5.  Taq polymerase contains bacterial DNA of unknown origin.

Authors:  K H Rand; H Houck
Journal:  Mol Cell Probes       Date:  1990-12       Impact factor: 2.365

6.  Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction.

Authors:  K H Wilson; R B Blitchington; R C Greene
Journal:  J Clin Microbiol       Date:  1990-09       Impact factor: 5.948

7.  Use of UV irradiation to reduce false positivity in polymerase chain reaction.

Authors:  C Y Ou; J L Moore; G Schochetman
Journal:  Biotechniques       Date:  1991-04       Impact factor: 1.993

8.  Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA.

Authors:  U Edwards; T Rogall; H Blöcker; M Emde; E C Böttger
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

9.  Elimination of contaminating DNA within polymerase chain reaction reagents: implications for a general approach to detection of uncultured pathogens.

Authors:  A Meier; D H Persing; M Finken; E C Böttger
Journal:  J Clin Microbiol       Date:  1993-03       Impact factor: 5.948

10.  Removal of DNA contamination in polymerase chain reaction reagents by ultraviolet irradiation.

Authors:  G Sarkar; S S Sommer
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

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  16 in total

Review 1.  Next-generation sequencing in the analysis of human microbiota: essential considerations for clinical application.

Authors:  Geraint B Rogers; Kenneth D Bruce
Journal:  Mol Diagn Ther       Date:  2010-12-01       Impact factor: 4.074

2.  Presence of beta-lactamase gene TEM-1 DNA sequence in commercial Taq DNA polymerase.

Authors:  Chuen-Sheue Chiang; Chang-Pan Liu; Li-Chuan Weng; Nai-Yu Wang; Gwo-Jen Liaw
Journal:  J Clin Microbiol       Date:  2005-01       Impact factor: 5.948

3.  [Histopathological diagnosis of periprosthetic joint infection following total hip arthroplasty : use of a standardized classification system of the periprosthetic interface membrane].

Authors:  M Müller; L Morawietz; O Hasart; P Strube; C Perka; S Tohtz
Journal:  Orthopade       Date:  2009-11       Impact factor: 1.087

4.  Escherichia coli XL10-gold bacteria produce bacteriophage.

Authors:  Fatima Kamal; Likui Zhang; Linda J Reha-Krantz
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

5.  Application of next generation sequencing technology on contamination monitoring in microbiology laboratory.

Authors:  Yan Xiao; Li Zhang; Bin Yang; Mingkun Li; Lili Ren; Jianwei Wang
Journal:  Biosaf Health       Date:  2019-03-01

6.  An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications.

Authors:  Sophie Champlot; Camille Berthelot; Mélanie Pruvost; E Andrew Bennett; Thierry Grange; Eva-Maria Geigl
Journal:  PLoS One       Date:  2010-09-28       Impact factor: 3.240

7.  Detecting the Presence of Bacterial DNA and RNA by Polymerase Chain Reaction to Diagnose Suspected Periprosthetic Joint Infection after Antibiotic Therapy.

Authors:  Xin-Yu Fang; Wen-Bo Li; Chao-Fan Zhang; Zi-da Huang; Hui-Yi Zeng; Zheng Dong; Wen-Ming Zhang
Journal:  Orthop Surg       Date:  2018-01-30       Impact factor: 2.071

8.  Molecular diagnosis of periprosthetic joint infection by quantitative RT-PCR of bacterial 16S ribosomal RNA.

Authors:  Mel S Lee; Wen-Hsin Chang; Su-Chin Chen; Pang-Hsin Hsieh; Hsin-Nung Shih; Steve W N Ueng; Gwo-Bin Lee
Journal:  ScientificWorldJournal       Date:  2013-12-17

9.  Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.

Authors:  Susannah J Salter; Michael J Cox; Elena M Turek; Szymon T Calus; William O Cookson; Miriam F Moffatt; Paul Turner; Julian Parkhill; Nicholas J Loman; Alan W Walker
Journal:  BMC Biol       Date:  2014-11-12       Impact factor: 7.431

10.  PEPR: pipelines for evaluating prokaryotic references.

Authors:  Nathan D Olson; Justin M Zook; Daniel V Samarov; Scott A Jackson; Marc L Salit
Journal:  Anal Bioanal Chem       Date:  2016-03-02       Impact factor: 4.142

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