Literature DB >> 2798131

Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA.

U Edwards1, T Rogall, H Blöcker, M Emde, E C Böttger.   

Abstract

Using a set of synthetic oligonucleotides homologous to broadly conserved sequences in-vitro amplification via the polymerase chain reaction followed by direct sequencing results in almost complete nucleotide determination of a gene coding for 16S ribosomal RNA. As a model system the nucleotide sequence of the 16S rRNA gene of M.kansasii was determined and found to be 98.7% homologous to that of M.bovis BCG. This is the first report on a contiguous sequence information of an entire amplified gene spanning 1.5 kb without any subcloning procedures.

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Year:  1989        PMID: 2798131      PMCID: PMC334891          DOI: 10.1093/nar/17.19.7843

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

1.  Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Authors:  D J Lane; B Pace; G J Olsen; D A Stahl; M L Sogin; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

Review 2.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

3.  Polymerase chain reaction reveals cloning artefacts.

Authors:  S Pääbo; A C Wilson
Journal:  Nature       Date:  1988-08-04       Impact factor: 49.962

4.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

5.  Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.

Authors:  S J Giovannoni; E F DeLong; G J Olsen; N R Pace
Journal:  J Bacteriol       Date:  1988-02       Impact factor: 3.490

6.  Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells.

Authors:  E F DeLong; G S Wickham; N R Pace
Journal:  Science       Date:  1989-03-10       Impact factor: 47.728

7.  Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus.

Authors:  U B Gyllensten; H A Erlich
Journal:  Proc Natl Acad Sci U S A       Date:  1988-10       Impact factor: 11.205

8.  Errors in the polymerase chain reaction.

Authors:  A M Dunning; P Talmud; S E Humphries
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

9.  Complete nucleotide sequence of the 16S rRNA gene of Mycobacterium bovis BCG.

Authors:  Y Suzuki; A Nagata; Y Ono; T Yamada
Journal:  J Bacteriol       Date:  1988-06       Impact factor: 3.490

10.  Species-specific oligonucleotide probes for rRNA of Clostridium difficile and related species.

Authors:  K H Wilson; R Blitchington; B Hindenach; R C Greene
Journal:  J Clin Microbiol       Date:  1988-12       Impact factor: 5.948

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  622 in total

1.  Bacterial diversity within the human subgingival crevice.

Authors:  I Kroes; P W Lepp; D A Relman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities.

Authors:  J Dunbar; L O Ticknor; C R Kuske
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

3.  Turicella otitidis as an unusual agent causing a posterior auricular abscess.

Authors:  S J Reynolds; M Behr; J McDonald
Journal:  J Clin Microbiol       Date:  2001-04       Impact factor: 5.948

4.  How stable is stable? Function versus community composition.

Authors:  A Fernández; S Huang; S Seston; J Xing; R Hickey; C Criddle; J Tiedje
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

5.  Clinically applicable multiplex PCR for four middle ear pathogens.

Authors:  P H Hendolin; L Paulin; J Ylikoski
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

6.  Simultaneous detection of Bacteroides forsythus and Prevotella intermedia by 16S rRNA gene-directed multiplex PCR.

Authors:  G Conrads; T F Flemmig; I Seyfarth; F Lampert; R Lütticken
Journal:  J Clin Microbiol       Date:  1999-05       Impact factor: 5.948

7.  Persistent Legionella infection in a patient after bone marrow transplantation.

Authors:  C Schindel; U Siepmann; S Han; A J Ullmann; E Mayer; T Fischer; M Maeurer
Journal:  J Clin Microbiol       Date:  2000-11       Impact factor: 5.948

8.  Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis.

Authors:  J Dunbar; L O Ticknor; C R Kuske
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

9.  Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland.

Authors:  Cheryl R Kuske; Lawrence O Ticknor; Mark E Miller; John M Dunbar; Jody A Davis; Susan M Barns; Jayne Belnap
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

10.  Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species.

Authors:  C Y Turenne; L Tschetter; J Wolfe; A Kabani
Journal:  J Clin Microbiol       Date:  2001-10       Impact factor: 5.948

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