Literature DB >> 15114340

Structure and mechanism of the RNA polymerase II transcription machinery.

Steven Hahn1.   

Abstract

Advances in structure determination of the bacterial and eukaryotic transcription machinery have led to a marked increase in the understanding of the mechanism of transcription. Models for the specific assembly of the RNA polymerase II transcription machinery at a promoter, conformational changes that occur during initiation of transcription, and the mechanism of initiation are discussed in light of recent developments.

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Year:  2004        PMID: 15114340      PMCID: PMC1189732          DOI: 10.1038/nsmb763

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  126 in total

1.  The zinc ribbon domains of the general transcription factors TFIIB and Brf: conserved functional surfaces but different roles in transcription initiation.

Authors:  S Hahn; S Roberts
Journal:  Genes Dev       Date:  2000-03-15       Impact factor: 11.361

2.  Promoter-selective properties of the TBP-related factor TRF1.

Authors:  M C Holmes; R Tjian
Journal:  Science       Date:  2000-05-05       Impact factor: 47.728

3.  Distinct classes of yeast promoters revealed by differential TAF recruitment.

Authors:  X Y Li; S R Bhaumik; M R Green
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

4.  Architecture of RNA polymerase II and implications for the transcription mechanism.

Authors:  P Cramer; D A Bushnell; J Fu; A L Gnatt; B Maier-Davis; N E Thompson; R R Burgess; A M Edwards; P R David; R D Kornberg
Journal:  Science       Date:  2000-04-28       Impact factor: 47.728

5.  Topography of the euryarchaeal transcription initiation complex.

Authors:  Michael S Bartlett; Michael Thomm; E Peter Geiduschek
Journal:  J Biol Chem       Date:  2003-11-13       Impact factor: 5.157

6.  TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

Authors:  G A Patikoglou; J L Kim; L Sun; S H Yang; T Kodadek; S K Burley
Journal:  Genes Dev       Date:  1999-12-15       Impact factor: 11.361

7.  Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.

Authors:  M Okuda; Y Watanabe; H Okamura; F Hanaoka; Y Ohkuma; Y Nishimura
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

Review 8.  TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes.

Authors:  M R Green
Journal:  Trends Biochem Sci       Date:  2000-02       Impact factor: 13.807

Review 9.  TAFs revisited: more data reveal new twists and confirm old ideas.

Authors:  S R Albright; R Tjian
Journal:  Gene       Date:  2000-01-25       Impact factor: 3.688

10.  Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex.

Authors:  Ying Liu; Charles Kung; James Fishburn; Aseem Z Ansari; Kevan M Shokat; Steven Hahn
Journal:  Mol Cell Biol       Date:  2004-02       Impact factor: 4.272

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  207 in total

1.  Proteomic methodologies to study transcription factor function.

Authors:  Harry W Jarrett
Journal:  Methods Mol Biol       Date:  2012

2.  TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism.

Authors:  Roderick T Hori; Shuping Xu; Xianyuan Hu; Sung Pyo
Journal:  Nucleic Acids Res       Date:  2004-07-22       Impact factor: 16.971

3.  Inactivated RNA polymerase II open complexes can be reactivated with TFIIE.

Authors:  Pavel Čabart; Donal S Luse
Journal:  J Biol Chem       Date:  2011-11-27       Impact factor: 5.157

Review 4.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

5.  Revealing the functions of TFIIB.

Authors:  Robert O J Weinzierl; Simone C Wiesler
Journal:  Transcription       Date:  2011-11-01

6.  Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH.

Authors:  Shivani Goel; Shankarling Krishnamurthy; Michael Hampsey
Journal:  J Biol Chem       Date:  2011-11-11       Impact factor: 5.157

Review 7.  Promoter-associated RNAs and promoter-targeted RNAs.

Authors:  Bing-Xue Yan; Jin-Xia Ma
Journal:  Cell Mol Life Sci       Date:  2012-03-14       Impact factor: 9.261

Review 8.  Rethinking the role of TFIIF in transcript initiation by RNA polymerase II.

Authors:  Donal S Luse
Journal:  Transcription       Date:  2012-07-01

9.  Kick-sTARting HIV-1 transcription elongation by 7SK snRNP deporTATion.

Authors:  Matjaz Barboric; Tina Lenasi
Journal:  Nat Struct Mol Biol       Date:  2010-08       Impact factor: 15.369

10.  Integrative structure modeling of macromolecular assemblies from proteomics data.

Authors:  Keren Lasker; Jeremy L Phillips; Daniel Russel; Javier Velázquez-Muriel; Dina Schneidman-Duhovny; Elina Tjioe; Ben Webb; Avner Schlessinger; Andrej Sali
Journal:  Mol Cell Proteomics       Date:  2010-05-27       Impact factor: 5.911

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