Literature DB >> 15272087

TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism.

Roderick T Hori1, Shuping Xu, Xianyuan Hu, Sung Pyo.   

Abstract

Gene activators contain activation domains that are thought to recruit limiting components of the transcription machinery to a core promoter. VP16, a viral gene activator, has served as a model for studying the mechanistic aspects of transcriptional activation from yeast to human. The VP16 activation domain can be divided into two modules--an N-terminal subdomain (VPN) and a C-terminal subdomain (VPC). This study demonstrates that VPC stimulates core promoters that are either independent or dependent on TAFs (TATA-box Binding Protein-Associated Factors). In contrast, VPN only activates the TAF-independent core promoter and this activity increases in a synergistic fashion when VPN is dimerized (VPN2). Compared to one copy of VPN (VPN1), VPN2 also displays a highly cooperative increase in binding hTFIIB. The increased TFIIB binding correlates with VPN2's increased ability to recruit a complex containing TFIID, TFIIA and TFIIB. However, VPN1 and VPN2 do not increase the assembly of a complex containing only TFIID and TFIIA. The VPN subdomain also facilitates assembly of a complex containing TBP:TFIIA:TFIIB, which lacks TAFs, and provides a mechanism that could function at TAF-independent promoters. Taken together, these results suggest the interaction between VPN and TFIIB potentially initiate a network of contacts allowing the activator to indirectly tether TFIID or TBP to DNA.

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Year:  2004        PMID: 15272087      PMCID: PMC506799          DOI: 10.1093/nar/gkh711

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  60 in total

1.  Core promoter elements and TAFs contribute to the diversity of transcriptional activation in vertebrates.

Authors:  Zheng Chen; James L Manley
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

2.  Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure.

Authors:  Xiao-Yong Li; Sukesh R Bhaumik; Xiaocun Zhu; Lei Li; Wu-Cheng Shen; Bharat L Dixit; Michael R Green
Journal:  Curr Biol       Date:  2002-07-23       Impact factor: 10.834

Review 3.  Structure and mechanism of the RNA polymerase II transcription machinery.

Authors:  Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2004-05       Impact factor: 15.369

4.  A conformational change in TFIIB is required for activator-mediated assembly of the preinitiation complex.

Authors:  James A Glossop; Tim R Dafforn; Stefan G E Roberts
Journal:  Nucleic Acids Res       Date:  2004-03-22       Impact factor: 16.971

5.  Transcription in yeast activated by a putative amphipathic alpha helix linked to a DNA binding unit.

Authors:  E Giniger; M Ptashne
Journal:  Nature       Date:  1987 Dec 17-23       Impact factor: 49.962

6.  Eukaryotic gene transcription with purified components.

Authors:  J D Dignam; P L Martin; B S Shastry; R G Roeder
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

7.  The VP16 activation domain interacts with multiple transcriptional components as determined by protein-protein cross-linking in vivo.

Authors:  Daniel B Hall; Kevin Struhl
Journal:  J Biol Chem       Date:  2002-09-23       Impact factor: 5.157

8.  Quantitative assessment of in vitro interactions implicates TATA-binding protein as a target of the VP16C transcriptional activation region.

Authors:  Yuri A Nedialkov; Steven J Triezenberg
Journal:  Arch Biochem Biophys       Date:  2004-05-01       Impact factor: 4.013

9.  Human mediator enhances activator-facilitated recruitment of RNA polymerase II and promoter recognition by TATA-binding protein (TBP) independently of TBP-associated factors.

Authors:  Shwu-Yuan Wu; Tianyuan Zhou; Cheng-Ming Chiang
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

10.  FRET evidence for a conformational change in TFIIB upon TBP-DNA binding.

Authors:  Le Zheng; Klaus P Hoeflich; Laura M Elsby; Mahua Ghosh; Stefan G E Roberts; Mitsuhiko Ikura
Journal:  Eur J Biochem       Date:  2004-02
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  2 in total

Review 1.  Tat gets the "green" light on transcription initiation.

Authors:  John Brady; Fatah Kashanchi
Journal:  Retrovirology       Date:  2005-11-09       Impact factor: 4.602

2.  Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors.

Authors:  Jiabiao Hu; Yong Lei; Wing-Ki Wong; Senquan Liu; Kai-Chuen Lee; Xiangjun He; Wenxing You; Rui Zhou; Jun-Tao Guo; Xiongfong Chen; Xianlu Peng; Hao Sun; He Huang; Hui Zhao; Bo Feng
Journal:  Nucleic Acids Res       Date:  2014-02-05       Impact factor: 16.971

  2 in total

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