Literature DB >> 15111391

A mechanistic model of the actin cycle.

M Bindschadler1, E A Osborn, C F Dewey, J L McGrath.   

Abstract

We have derived a broad, deterministic model of the steady-state actin cycle that includes its major regulatory mechanisms. Ours is the first model to solve the complete nucleotide profile within filaments, a feature that determines the dynamics and geometry of actin networks at the leading edges of motile cells, and one that has challenged investigators developing models to interpret steady-state experiments. We arrived at the nucleotide profile through analytic and numerical approaches that completely agree. Our model reproduces behaviors seen in numerous experiments with purified proteins, but allows a detailed inspection of the concentrations and fluxes that might exist in these experiments. These inspections provide new insight into the mechanisms that determine the rate of actin filament treadmilling. Specifically, we find that mechanisms for enhancing Pi release from the ADP.Pi intermediate on filaments, for increasing the off rate of ADP-bound subunits at pointed ends, and the multiple, simultaneous functions of profilin, make unique and essential contributions to increased treadmilling. In combination, these mechanisms have a theoretical capacity to increase treadmilling to levels limited only by the amount of available actin. This limitation arises because as the cycle becomes more dynamic, it tends toward the unpolymerized state.

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Year:  2004        PMID: 15111391      PMCID: PMC1304143          DOI: 10.1016/S0006-3495(04)74326-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  59 in total

1.  Annealing accounts for the length of actin filaments formed by spontaneous polymerization.

Authors:  D Sept; J Xu; T D Pollard; J A McCammon
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Role of nucleotide exchange and hydrolysis in the function of profilin in action assembly.

Authors:  I Perelroizen; D Didry; H Christensen; N H Chua; M F Carlier
Journal:  J Biol Chem       Date:  1996-05-24       Impact factor: 5.157

3.  How profilin/barbed-end synergy controls actin polymerization: a kinetic model of the ATP hydrolysis circuit.

Authors:  P A Dufort; C J Lumsden
Journal:  Cell Motil Cytoskeleton       Date:  1996

4.  Tbeta 4 is not a simple G-actin sequestering protein and interacts with F-actin at high concentration.

Authors:  M F Carlier; D Didry; I Erk; J Lepault; M L Van Troys; J Vandekerckhove; I Perelroizen; H Yin; Y Doi; D Pantaloni
Journal:  J Biol Chem       Date:  1996-04-19       Impact factor: 5.157

5.  Two activities of cofilin, severing and accelerating directional depolymerization of actin filaments, are affected differentially by mutations around the actin-binding helix.

Authors:  K Moriyama; I Yahara
Journal:  EMBO J       Date:  1999-12-01       Impact factor: 11.598

6.  Nucleotide binding to actin. Cation dependence of nucleotide dissociation and exchange rates.

Authors:  H J Kinosian; L A Selden; J E Estes; L C Gershman
Journal:  J Biol Chem       Date:  1993-04-25       Impact factor: 5.157

7.  Actin depolymerizing factor (ADF/cofilin) enhances the rate of filament turnover: implication in actin-based motility.

Authors:  M F Carlier; V Laurent; J Santolini; R Melki; D Didry; G X Xia; Y Hong; N H Chua; D Pantaloni
Journal:  J Cell Biol       Date:  1997-03-24       Impact factor: 10.539

8.  Continuous monitoring of Pi release following nucleotide hydrolysis in actin or tubulin assembly using 2-amino-6-mercapto-7-methylpurine ribonucleoside and purine-nucleoside phosphorylase as an enzyme-linked assay.

Authors:  R Melki; S Fievez; M F Carlier
Journal:  Biochemistry       Date:  1996-09-17       Impact factor: 3.162

9.  Dynamics of capping protein and actin assembly in vitro: uncapping barbed ends by polyphosphoinositides.

Authors:  D A Schafer; P B Jennings; J A Cooper
Journal:  J Cell Biol       Date:  1996-10       Impact factor: 10.539

10.  How profilin promotes actin filament assembly in the presence of thymosin beta 4.

Authors:  D Pantaloni; M F Carlier
Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

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  25 in total

Review 1.  Use of virtual cell in studies of cellular dynamics.

Authors:  Boris M Slepchenko; Leslie M Loew
Journal:  Int Rev Cell Mol Biol       Date:  2010       Impact factor: 6.813

2.  Role of ATP-hydrolysis in the dynamics of a single actin filament.

Authors:  Padinhateeri Ranjith; Kirone Mallick; Jean-François Joanny; David Lacoste
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  Accelerators, Brakes, and Gears of Actin Dynamics in Dendritic Spines.

Authors:  Crystal G Pontrello; Iryna M Ethell
Journal:  Open Neurosci J       Date:  2009-01-01

Review 4.  Deconstructing signal transduction pathways that regulate the actin cytoskeleton in dendritic spines.

Authors:  Peter Penzes; Michael E Cahill
Journal:  Cytoskeleton (Hoboken)       Date:  2012-03-12

5.  Real-time measurements of actin filament polymerization by total internal reflection fluorescence microscopy.

Authors:  Jeffrey R Kuhn; Thomas D Pollard
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

6.  Actin polymerization kinetics, cap structure, and fluctuations.

Authors:  Dimitrios Vavylonis; Qingbo Yang; Ben O'Shaughnessy
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-06       Impact factor: 11.205

7.  ATP hydrolysis stimulates large length fluctuations in single actin filaments.

Authors:  Evgeny B Stukalin; Anatoly B Kolomeisky
Journal:  Biophys J       Date:  2006-01-27       Impact factor: 4.033

8.  Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy.

Authors:  Ikuko Fujiwara; Dimitrios Vavylonis; Thomas D Pollard
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-15       Impact factor: 11.205

9.  Stochastic simulation of actin dynamics reveals the role of annealing and fragmentation.

Authors:  Joseph Fass; Chi Pak; James Bamburg; Alex Mogilner
Journal:  J Theor Biol       Date:  2008-01-11       Impact factor: 2.691

10.  An open model of actin dendritic nucleation.

Authors:  Jonathon A Ditlev; Nathaniel M Vacanti; Igor L Novak; Leslie M Loew
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

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