Literature DB >> 15075263

Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae.

Guillaume Stahl1, Samia N Ben Salem, Lifeng Chen, Bing Zhao, Philip J Farabaugh.   

Abstract

When the yeast Saccharomyces cerevisiae shifts from rapid growth on glucose to slow growth on ethanol, it undergoes profound changes in cellular metabolism, including the destruction of most of the translational machinery. We have examined the effect of this metabolic change, termed the diauxic shift, on the frequency of translational errors. Recoding sites are mRNA sequences that increase the frequency of translational errors, providing a convenient reporter of translational accuracy. We found that the diauxic shift causes no overall change in translational accuracy but does cause a strong reduction in the frequency of one type of programmed error: Ty +1 frameshifting. Genetic data suggest that this effect may be due to changes in the relative amounts of tRNA participating in translation elongation. We discuss possible implications for expression strategies that use recoding.

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Year:  2004        PMID: 15075263      PMCID: PMC387642          DOI: 10.1128/EC.3.2.331-338.2004

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  47 in total

1.  Codon usage tabulated from international DNA sequence databases: status for the year 2000.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

3.  Programmed +1 frameshifting stimulated by complementarity between a downstream mRNA sequence and an error-correcting region of rRNA.

Authors:  Z Li; G Stahl; P J Farabaugh
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

4.  Nonsense-mediated decay mutants do not affect programmed -1 frameshifting.

Authors:  L Bidou; G Stahl; I Hatin; O Namy; J P Rousset; P J Farabaugh
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

5.  Near-cognate peptidyl-tRNAs promote +1 programmed translational frameshifting in yeast.

Authors:  A Sundararajan; W A Michaud; Q Qian; G Stahl; P J Farabaugh
Journal:  Mol Cell       Date:  1999-12       Impact factor: 17.970

6.  Growth phase dependent stop codon readthrough and shift of translation reading frame in Escherichia coli.

Authors:  A M Wenthzel; M Stancek; L A Isaksson
Journal:  FEBS Lett       Date:  1998-01-16       Impact factor: 4.124

7.  Isolation and characterization of a novel actin filament-binding protein from Saccharomyces cerevisiae.

Authors:  T Asakura; T Sasaki; F Nagano; A Satoh; H Obaishi; H Nishioka; H Imamura; K Hotta; K Tanaka; H Nakanishi; Y Takai
Journal:  Oncogene       Date:  1998-01-08       Impact factor: 9.867

8.  Analysis of micronuclear, macronuclear and cDNA sequences encoding the regulatory subunit of cAMP-dependent protein kinase of Euplotes octocarinatus: evidence for a ribosomal frameshift.

Authors:  M Tan; K Heckmann; C Brünen-Nieweler
Journal:  J Eukaryot Microbiol       Date:  2001 Jan-Feb       Impact factor: 3.346

9.  Identification and characterisation of a developmentally regulated mammalian gene that utilises -1 programmed ribosomal frameshifting.

Authors:  K Shigemoto; J Brennan; E Walls; C J Watson; D Stott; P W Rigby; A D Reith
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

10.  Euplotes telomerase contains an La motif protein produced by apparent translational frameshifting.

Authors:  S Aigner; J Lingner; K J Goodrich; C A Grosshans; A Shevchenko; M Mann; T R Cech
Journal:  EMBO J       Date:  2000-11-15       Impact factor: 11.598

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  20 in total

1.  A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift.

Authors:  Ramune Leipuviene; Glenn R Björk
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

2.  Evolutionary specialization of recoding: frameshifting in the expression of S. cerevisiae antizyme mRNA is via an atypical antizyme shift site but is still +1.

Authors:  Ivaylo P Ivanov; Raymond F Gesteland; John F Atkins
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

Review 3.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 4.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

5.  Effects of low-shear modeled microgravity on cell function, gene expression, and phenotype in Saccharomyces cerevisiae.

Authors:  B Purevdorj-Gage; K B Sheehan; L E Hyman
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

6.  Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli.

Authors:  Olga L Gurvich; Pavel V Baranov; Raymond F Gesteland; John F Atkins
Journal:  J Bacteriol       Date:  2005-06       Impact factor: 3.490

7.  Cotranslational transport of ABP140 mRNA to the distal pole of S. cerevisiae.

Authors:  Cornelia Kilchert; Anne Spang
Journal:  EMBO J       Date:  2011-07-26       Impact factor: 11.598

8.  Analysis of autophagy activated during changes in carbon source availability in yeast cells.

Authors:  Ryo Iwama; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2019-02-12       Impact factor: 5.157

9.  The bubble-induced population dynamics of fermenting yeasts.

Authors:  Atul Srivastava; Kenji Kikuchi; Takuji Ishikawa
Journal:  J R Soc Interface       Date:  2020-11-18       Impact factor: 4.118

10.  Connection between stop codon reassignment and frequent use of shifty stop frameshifting.

Authors:  Haritha Vallabhaneni; Hua Fan-Minogue; David M Bedwell; Philip J Farabaugh
Journal:  RNA       Date:  2009-03-27       Impact factor: 4.942

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