Literature DB >> 11574691

Identification and characterisation of a developmentally regulated mammalian gene that utilises -1 programmed ribosomal frameshifting.

K Shigemoto1, J Brennan, E Walls, C J Watson, D Stott, P W Rigby, A D Reith.   

Abstract

Translational recoding of mRNA through a -1 ribosomal slippage mechanism has been observed in RNA viruses and retrotransposons of both eukaryotes and prokaryotes. Whilst this provides a potentially powerful mechanism of gene regulation, the utilization of -1 translational frameshifting in regulating mammalian gene expression has remained obscure. Here we report a mammalian gene, Edr, which provides the first example of -1 translational recoding in a eukaryotic cellular gene. In addition to bearing functional frameshift elements that mediate expression of distinct polypeptides, Edr bears both CCHC zinc-finger and putative aspartyl protease catalytic site retroviral-like motifs, indicative of a relic retroviral-like origin for Edr. These features, coupled with conservation of Edr as a single copy gene in mouse and man and striking spatio-temporal regulation of expression during embryogenesis, suggest that Edr plays a functionally important role in mammalian development.

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Year:  2001        PMID: 11574691      PMCID: PMC60235          DOI: 10.1093/nar/29.19.4079

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  45 in total

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Journal:  DNA Res       Date:  1999-06-30       Impact factor: 4.458

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Authors:  C M Gorman; D P Lane; C J Watson; P W Rigby
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Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

5.  Identification of putative programmed -1 ribosomal frameshift signals in large DNA databases.

Authors:  A B Hammell; R C Taylor; S W Peltz; J D Dinman
Journal:  Genome Res       Date:  1999-05       Impact factor: 9.043

6.  Discovery of a spermatogenesis stage-specific ornithine decarboxylase antizyme: antizyme 3.

Authors:  I P Ivanov; A Rohrwasser; D A Terreros; R F Gesteland; J F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

7.  Identification of a zinc finger protein that binds to the sterol regulatory element.

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8.  Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme.

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Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

9.  A molecular analysis of mouse development from 8 to 10 days post coitum detects changes only in embryonic globin expression.

Authors:  D G Wilkinson; J A Bailes; J E Champion; A P McMahon
Journal:  Development       Date:  1987-04       Impact factor: 6.868

10.  Conservation of polyamine regulation by translational frameshifting from yeast to mammals.

Authors:  I P Ivanov; S Matsufuji; Y Murakami; R F Gesteland; J F Atkins
Journal:  EMBO J       Date:  2000-04-17       Impact factor: 11.598

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  48 in total

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Authors:  Ewan P Plant; Pinger Wang; Jonathan L Jacobs; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2004-02-03       Impact factor: 16.971

2.  Identification of a cellular factor that modulates HIV-1 programmed ribosomal frameshifting.

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Review 3.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
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4.  Disruption of a locus encoding a nucleolar zinc finger protein decreases tachyzoite-to-bradyzoite differentiation in Toxoplasma gondii.

Authors:  Padmini Vanchinathan; Jeremy L Brewer; Omar S Harb; John C Boothroyd; Upinder Singh
Journal:  Infect Immun       Date:  2005-10       Impact factor: 3.441

5.  A small family of sushi-class retrotransposon-derived genes in mammals and their relation to genomic imprinting.

Authors:  Neil A Youngson; Sylvia Kocialkowski; Nina Peel; Anne C Ferguson-Smith
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

6.  Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae.

Authors:  Michaël Bekaert; Hugues Richard; Bernard Prum; Jean-Pierre Rousset
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7.  A conserved eEF2 coding variant in SCA26 leads to loss of translational fidelity and increased susceptibility to proteostatic insult.

Authors:  Katherine E Hekman; Guo-Yun Yu; Christopher D Brown; Haipeng Zhu; Xiaofei Du; Kristina Gervin; Dag Erik Undlien; April Peterson; Giovanni Stevanin; H Brent Clark; Stefan M Pulst; Thomas D Bird; Kevin P White; Christopher M Gomez
Journal:  Hum Mol Genet       Date:  2012-09-21       Impact factor: 6.150

Review 8.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

9.  Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae.

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10.  Genetic and molecular analyses of PEG10 reveal new aspects of genomic organization, transcription and translation.

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