Literature DB >> 15068038

A universal definition of life: autonomy and open-ended evolution.

Kepa Ruiz-Mirazo1, Juli Peretó, Alvaro Moreno.   

Abstract

Life is a complex phenomenon that not only requires individual self-producing and self-sustaining systems but also a historical-collective organization of those individual systems, which brings about characteristic evolutionary dynamics. On these lines, we propose to define universally living beings as autonomous systems with open-ended evolution capacities, and we claim that all such systems must have a semi-permeable active boundary (membrane), an energy transduction apparatus (set of energy currencies) and, at least, two types of functionally interdependent macromolecular components (catalysts and records). The latter is required to articulate a 'phenotype-genotype' decoupling that leads to a scenario where the global network of autonomous systems allows for an open-ended increase in the complexity of the individual agents. Thus, the basic-individual organization of biological systems depends critically on being instructed by patterns (informational records) whose generation and reliable transmission cannot be explained but take into account the complete historical network of relationships among those systems. We conclude that a proper definition of life should consider both levels, individual and collective: living systems cannot be fully constituted without being part of the evolutionary process of a whole ecosystem. Finally, we also discuss a few practical implications of the definition for different programs of research.

Mesh:

Year:  2004        PMID: 15068038     DOI: 10.1023/b:orig.0000016440.53346.dc

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  16 in total

Review 1.  Phylogenetic classification and the universal tree.

Authors:  W F Doolittle
Journal:  Science       Date:  1999-06-25       Impact factor: 47.728

2.  Synthesizing life.

Authors:  J W Szostak; D P Bartel; P L Luisi
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

3.  Metabolism and the problem of its universalization.

Authors:  A M Bergareche; K Ruiz-Mirazo
Journal:  Biosystems       Date:  1999-01       Impact factor: 1.973

4.  Special essay. The seven pillars of life.

Authors:  Daniel E Koshland
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

5.  Structural limits for evolutive capacities in complex molecular systems.

Authors:  A M Bergareche; J F Ostolaza
Journal:  Riv Biol       Date:  1990

6.  About various definitions of life.

Authors:  P L Luisi
Journal:  Orig Life Evol Biosph       Date:  1998-10       Impact factor: 1.950

7.  Homeostatic tendencies of the earth's atmosphere.

Authors:  J E Lovelock; L Margulis
Journal:  Orig Life       Date:  1974 Jan-Apr

8.  Autopoiesis: the status of its system logic.

Authors:  G R Fleischaker
Journal:  Biosystems       Date:  1988       Impact factor: 1.973

9.  Phase separation, charge separation and biogenesis.

Authors:  H J Morowitz
Journal:  Biosystems       Date:  1981       Impact factor: 1.973

10.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

Authors:  M Eigen; P Schuster
Journal:  Naturwissenschaften       Date:  1977-11
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  40 in total

1.  Self-replication: spelling it out in a chemical background.

Authors:  Wentao Ma; Chunwu Yu; Wentao Zhang; Ping Zhou; Jiming Hu
Journal:  Theory Biosci       Date:  2010-12-21       Impact factor: 1.919

2.  Structural analyses of a hypothetical minimal metabolism.

Authors:  Toni Gabaldón; Juli Peretó; Francisco Montero; Rosario Gil; Amparo Latorre; Andrés Moya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

Review 3.  Ten reasons to exclude viruses from the tree of life.

Authors:  David Moreira; Purificación López-García
Journal:  Nat Rev Microbiol       Date:  2009-03-09       Impact factor: 60.633

4.  Evolution in biological and nonbiological systems under different mechanisms of generation and inheritance.

Authors:  Isaac Salazar-Ciudad
Journal:  Theory Biosci       Date:  2008-10-23       Impact factor: 1.919

5.  Defining life or bringing biology to life.

Authors:  Kepa Ruiz-Mirazo; Juli Peretó; Alvaro Moreno
Journal:  Orig Life Evol Biosph       Date:  2010-02-25       Impact factor: 1.950

6.  On what it is to fly can tell us something about what it is to live.

Authors:  Christophe Malaterre
Journal:  Orig Life Evol Biosph       Date:  2010-03-03       Impact factor: 1.950

Review 7.  Hidden Concepts in the History and Philosophy of Origins-of-Life Studies: a Workshop Report.

Authors:  Carlos Mariscal; Ana Barahona; Nathanael Aubert-Kato; Arsev Umur Aydinoglu; Stuart Bartlett; María Luz Cárdenas; Kuhan Chandru; Carol Cleland; Benjamin T Cocanougher; Nathaniel Comfort; Athel Cornish-Bowden; Terrence Deacon; Tom Froese; Donato Giovannelli; John Hernlund; Piet Hut; Jun Kimura; Marie-Christine Maurel; Nancy Merino; Alvaro Moreno; Mayuko Nakagawa; Juli Peretó; Nathaniel Virgo; Olaf Witkowski; H James Cleaves
Journal:  Orig Life Evol Biosph       Date:  2019-08-09       Impact factor: 1.950

8.  Zipf's Law, unbounded complexity and open-ended evolution.

Authors:  Bernat Corominas-Murtra; Luís F Seoane; Ricard Solé
Journal:  J R Soc Interface       Date:  2018-12-21       Impact factor: 4.118

9.  How to Build a Biological Machine Using Engineering Materials and Methods.

Authors:  Alex Ellery
Journal:  Biomimetics (Basel)       Date:  2020-07-26

10.  Chemical Evolution and the Evolutionary Definition of Life.

Authors:  Paul G Higgs
Journal:  J Mol Evol       Date:  2017-06-29       Impact factor: 2.395

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