Literature DB >> 31399826

Hidden Concepts in the History and Philosophy of Origins-of-Life Studies: a Workshop Report.

Carlos Mariscal1, Ana Barahona2, Nathanael Aubert-Kato3,4, Arsev Umur Aydinoglu5,6, Stuart Bartlett3,7, María Luz Cárdenas8, Kuhan Chandru3,9,10, Carol Cleland11, Benjamin T Cocanougher12,13, Nathaniel Comfort14, Athel Cornish-Bowden8, Terrence Deacon15, Tom Froese16,17, Donato Giovannelli3,18,19,20,21, John Hernlund3, Piet Hut3,18, Jun Kimura22, Marie-Christine Maurel23, Nancy Merino3,24, Alvaro Moreno25, Mayuko Nakagawa3, Juli Peretó26, Nathaniel Virgo3,27,28, Olaf Witkowski3,18, H James Cleaves29,30,31,32,33.   

Abstract

In this review, we describe some of the central philosophical issues facing origins-of-life research and provide a targeted history of the developments that have led to the multidisciplinary field of origins-of-life studies. We outline these issues and developments to guide researchers and students from all fields. With respect to philosophy, we provide brief summaries of debates with respect to (1) definitions (or theories) of life, what life is and how research should be conducted in the absence of an accepted theory of life, (2) the distinctions between synthetic, historical, and universal projects in origins-of-life studies, issues with strategies for inferring the origins of life, such as (3) the nature of the first living entities (the "bottom up" approach) and (4) how to infer the nature of the last universal common ancestor (the "top down" approach), and (5) the status of origins of life as a science. Each of these debates influences the others. Although there are clusters of researchers that agree on some answers to these issues, each of these debates is still open. With respect to history, we outline several independent paths that have led to some of the approaches now prevalent in origins-of-life studies. These include one path from early views of life through the scientific revolutions brought about by Linnaeus (von Linn.), Wöhler, Miller, and others. In this approach, new theories, tools, and evidence guide new thoughts about the nature of life and its origin. We also describe another family of paths motivated by a" circularity" approach to life, which is guided by such thinkers as Maturana & Varela, Gánti, Rosen, and others. These views echo ideas developed by Kant and Aristotle, though they do so using modern science in ways that produce exciting avenues of investigation. By exploring the history of these ideas, we can see how many of the issues that currently interest us have been guided by the contexts in which the ideas were developed. The disciplinary backgrounds of each of these scholars has influenced the questions they sought to answer, the experiments they envisioned, and the kinds of data they collected. We conclude by encouraging scientists and scholars in the humanities and social sciences to explore ways in which they can interact to provide a deeper understanding of the conceptual assumptions, structure, and history of origins-of-life research. This may be useful to help frame future research agendas and bring awareness to the multifaceted issues facing this challenging scientific question.

Entities:  

Keywords:  Artificial life; Epistemology; LUCA; Multidisciplinary science; Prebiotic evolution; Self-organization; Theories of life

Mesh:

Year:  2019        PMID: 31399826     DOI: 10.1007/s11084-019-09580-x

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  119 in total

1.  Open problems in artificial life.

Authors:  M A Bedau; J S McCaskill; N H Packard; S Rasmussen; C Adami; D G Green; T Ikegami; K Kaneko; T S Ray
Journal:  Artif Life       Date:  2000       Impact factor: 0.667

2.  Behavioral metabolution: the adaptive and evolutionary potential of metabolism-based chemotaxis.

Authors:  Matthew D Egbert; Xabier E Barandiaran; Ezequiel A Di Paolo
Journal:  Artif Life       Date:  2011-10-28       Impact factor: 0.667

3.  Complex patterns in a simple system.

Authors:  J E Pearson
Journal:  Science       Date:  1993-07-09       Impact factor: 47.728

4.  Models and standards of proof in cross-disciplinary science: the case of arsenic DNA.

Authors:  Steven A Benner; William Bains; Sara Seager
Journal:  Astrobiology       Date:  2013-05-02       Impact factor: 4.335

5.  Open-Ended Evolution: Perspectives from the OEE Workshop in York.

Authors:  Tim Taylor; Mark Bedau; Alastair Channon; David Ackley; Wolfgang Banzhaf; Guillaume Beslon; Emily Dolson; Tom Froese; Simon Hickinbotham; Takashi Ikegami; Barry McMullin; Norman Packard; Steen Rasmussen; Nathaniel Virgo; Eran Agmon; Edward Clark; Simon McGregor; Charles Ofria; Glen Ropella; Lee Spector; Kenneth O Stanley; Adam Stanton; Christopher Timperley; Anya Vostinar; Michael Wiser
Journal:  Artif Life       Date:  2016-07-29       Impact factor: 0.667

6.  Science, politics and spontaneous generation in nineteenth-century France: the Pasteur-Pouchet debate.

Authors:  J Farley; G L Geison
Journal:  Bull Hist Med       Date:  1974       Impact factor: 1.314

Review 7.  Viral quasispecies.

Authors:  M Eigen
Journal:  Sci Am       Date:  1993-07       Impact factor: 2.142

8.  The physiology and habitat of the last universal common ancestor.

Authors:  Madeline C Weiss; Filipa L Sousa; Natalia Mrnjavac; Sinje Neukirchen; Mayo Roettger; Shijulal Nelson-Sathi; William F Martin
Journal:  Nat Microbiol       Date:  2016-07-25       Impact factor: 17.745

9.  Life as we know it.

Authors:  Karl Friston
Journal:  J R Soc Interface       Date:  2013-07-03       Impact factor: 4.118

10.  Physiology, phylogeny, and LUCA.

Authors:  William F Martin; Madeline C Weiss; Sinje Neukirchen; Shijulal Nelson-Sathi; Filipa L Sousa
Journal:  Microb Cell       Date:  2016-11-25
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  4 in total

1.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

2.  Defining Lyfe in the Universe: From Three Privileged Functions to Four Pillars.

Authors:  Stuart Bartlett; Michael L Wong
Journal:  Life (Basel)       Date:  2020-04-16

3.  The essence of life revisited: how theories can shed light on it.

Authors:  Athel Cornish-Bowden; María Luz Cárdenas
Journal:  Theory Biosci       Date:  2021-05-06       Impact factor: 1.315

4.  Polyesters as a Model System for Building Primitive Biologies from Non-Biological Prebiotic Chemistry.

Authors:  Kuhan Chandru; Irena Mamajanov; H James Cleaves; Tony Z Jia
Journal:  Life (Basel)       Date:  2020-01-19
  4 in total

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