Literature DB >> 28664404

Chemical Evolution and the Evolutionary Definition of Life.

Paul G Higgs1.   

Abstract

Darwinian evolution requires a mechanism for generation of diversity in a population, and selective differences between individuals that influence reproduction. In biology, diversity is generated by mutations and selective differences arise because of the encoded functions of the sequences (e.g., ribozymes or proteins). Here, I draw attention to a process that I will call chemical evolution, in which the diversity is generated by random chemical synthesis instead of (or in addition to) mutation, and selection acts on physicochemical properties, such as hydrolysis, photolysis, solubility, or surface binding. Chemical evolution applies to short oligonucleotides that can be generated by random polymerization, as well as by template-directed replication, and which may be too short to encode a specific function. Chemical evolution is an important stage on the pathway to life, between the stage of "just chemistry" and the stage of full biological evolution. A mathematical model is presented here that illustrates the differences between these three stages. Chemical evolution leads to much larger differences in molecular concentrations than can be achieved by selection without replication. However, chemical evolution is not open-ended, unlike biological evolution. The ability to undergo Darwinian evolution is often considered to be a defining feature of life. Here, I argue that chemical evolution, although Darwinian, does not quite constitute life, and that a good place to put the conceptual boundary between non-life and life is between chemical and biological evolution.

Entities:  

Keywords:  Chemical evolution; Definition of life; Error threshold; Origin of life; Quasispecies; RNA world

Mesh:

Substances:

Year:  2017        PMID: 28664404     DOI: 10.1007/s00239-017-9799-3

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  27 in total

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Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  A universal definition of life: autonomy and open-ended evolution.

Authors:  Kepa Ruiz-Mirazo; Juli Peretó; Alvaro Moreno
Journal:  Orig Life Evol Biosph       Date:  2004-06       Impact factor: 1.950

3.  Comparison of the roles of nucleotide synthesis, polymerization, and recombination in the origin of autocatalytic sets of RNAs.

Authors:  Meng Wu; Paul G Higgs
Journal:  Astrobiology       Date:  2011-11-07       Impact factor: 4.335

4.  Defining life.

Authors:  Steven A Benner
Journal:  Astrobiology       Date:  2010-12       Impact factor: 4.335

5.  Efficient enzyme-free copying of all four nucleobases templated by immobilized RNA.

Authors:  Christopher Deck; Mario Jauker; Clemens Richert
Journal:  Nat Chem       Date:  2011-07-10       Impact factor: 24.427

6.  From replicators to reproducers: the first major transitions leading to life.

Authors:  E Szathmáry; J Maynard Smith
Journal:  J Theor Biol       Date:  1997-08-21       Impact factor: 2.691

7.  Multispecies population dynamics of prebiotic compositional assemblies.

Authors:  Omer Markovitch; Doron Lancet
Journal:  J Theor Biol       Date:  2014-05-14       Impact factor: 2.691

8.  Universal sequence replication, reversible polymerization and early functional biopolymers: a model for the initiation of prebiotic sequence evolution.

Authors:  Sara Imari Walker; Martha A Grover; Nicholas V Hud
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

9.  Ester-Mediated Amide Bond Formation Driven by Wet-Dry Cycles: A Possible Path to Polypeptides on the Prebiotic Earth.

Authors:  Jay G Forsythe; Sheng-Sheng Yu; Irena Mamajanov; Martha A Grover; Ramanarayanan Krishnamurthy; Facundo M Fernández; Nicholas V Hud
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-15       Impact factor: 15.336

10.  The origin of life is a spatially localized stochastic transition.

Authors:  Meng Wu; Paul G Higgs
Journal:  Biol Direct       Date:  2012-11-24       Impact factor: 4.540

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  14 in total

1.  Stable coevolutionary regimes for genetic parasites and their hosts: you must differ to coevolve.

Authors:  Faina Berezovskaya; Georgy P Karev; Mikhail I Katsnelson; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2018-12-14       Impact factor: 4.540

2.  Probing complexity: thermodynamics and computational mechanics approaches to origins studies.

Authors:  Stuart J Bartlett; Patrick Beckett
Journal:  Interface Focus       Date:  2019-10-18       Impact factor: 3.906

Review 3.  Systems protobiology: origin of life in lipid catalytic networks.

Authors:  Doron Lancet; Raphael Zidovetzki; Omer Markovitch
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

4.  Incorporating antagonistic pleiotropy into models for molecular replicators.

Authors:  Tianjiao Qu; Peter Calabrese; Pratik Singhavi; John Tower
Journal:  Biosystems       Date:  2020-12-25       Impact factor: 1.973

5.  The Role of Templating in the Emergence of RNA from the Prebiotic Chemical Mixture.

Authors:  Andrew S Tupper; Kevin Shi; Paul G Higgs
Journal:  Life (Basel)       Date:  2017-10-31

Review 6.  Chemomimesis and Molecular Darwinism in Action: From Abiotic Generation of Nucleobases to Nucleosides and RNA.

Authors:  Raffaele Saladino; Judit E Šponer; Jiří Šponer; Giovanna Costanzo; Samanta Pino; Ernesto Di Mauro
Journal:  Life (Basel)       Date:  2018-06-20

7.  Elucidating Self-Assembling Peptide Aggregation via Morphoscanner: A New Tool for Protein-Peptide Structural Characterization.

Authors:  Gloria A A Saracino; Federico Fontana; Shehrazade Jekhmane; João Medeiros Silva; Markus Weingarth; Fabrizio Gelain
Journal:  Adv Sci (Weinh)       Date:  2018-06-22       Impact factor: 16.806

8.  Survival of RNA Replicators is much Easier in Protocells than in Surface-Based, Spatial Systems.

Authors:  Vismay Shah; Jonathan de Bouter; Quinn Pauli; Andrew S Tupper; Paul G Higgs
Journal:  Life (Basel)       Date:  2019-08-07

9.  The origin of biological homochirality along with the origin of life.

Authors:  Yong Chen; Wentao Ma
Journal:  PLoS Comput Biol       Date:  2020-01-08       Impact factor: 4.475

10.  Life in The Context of Order and Complexity.

Authors:  Christian Mayer
Journal:  Life (Basel)       Date:  2020-01-18
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