Literature DB >> 15062775

Evolving haloalkane dehalogenases.

Dick B Janssen1.   

Abstract

Mechanistic insight into the biochemistry of carbon-halogen bond cleavage is rapidly growing because of recent structural, biochemical and computational studies that have provided further insight into how haloalkane dehalogenases achieve their impressive catalytic activity. An occluded water-free active-site cavity together with strong hydrogen bond donating groups reduce the transition state energy barrier compared with that of the non-enzymatic reaction in water. Even though all known haloalkane dehalogenases belong to the alpha/beta-hydrolase fold family, there are interesting differences in mechanistic and kinetic details, as shown by properties of mutant enzymes and transient-state kinetic studies. To improve enzymatic degradation of some environmentally important recalcitrant compounds, site-directed mutagenesis and directed-evolution studies are being done.

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Year:  2004        PMID: 15062775     DOI: 10.1016/j.cbpa.2004.02.012

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  55 in total

1.  Reaction of cis-3-chloroacrylic acid dehalogenase with an allene substrate, 2,3-butadienoate: hydration via an enamine.

Authors:  Gottfried K Schroeder; William H Johnson; Jamison P Huddleston; Hector Serrano; Kenneth A Johnson; Christian P Whitman
Journal:  J Am Chem Soc       Date:  2011-12-19       Impact factor: 15.419

2.  Structure and activity of DmmA, a marine haloalkane dehalogenase.

Authors:  Jennifer J Gehret; Liangcai Gu; Todd W Geders; William Clay Brown; Lena Gerwick; William H Gerwick; David H Sherman; Janet L Smith
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

3.  Interaction of organic solvents with protein structures at protein-solvent interface.

Authors:  Morteza Khabiri; Babak Minofar; Jan Brezovský; Jiří Damborský; Rudiger Ettrich
Journal:  J Mol Model       Date:  2012-07-04       Impact factor: 1.810

4.  Crystallization and preliminary X-ray diffraction studies of the putative haloalkane dehalogenase DppA from Plesiocystis pacifica SIR-I.

Authors:  Xenia Bogdanović; Martin Hesseler; Gottfried J Palm; Uwe T Bornscheuer; Winfried Hinrichs
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-06-24

5.  Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium.

Authors:  Ivana Drienovska; Eva Chovancova; Tana Koudelakova; Jiri Damborsky; Radka Chaloupkova
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

6.  Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17.

Authors:  Katsiaryna Tratsiak; Oksana Degtjarik; Ivana Drienovska; Lukas Chrast; Pavlina Rezacova; Michal Kuty; Radka Chaloupkova; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-05-25

7.  Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.

Authors:  Yuji Nagata; Zbynek Prokop; Yukari Sato; Petr Jerabek; Ashwani Kumar; Yoshiyuki Ohtsubo; Masataka Tsuda; Jirí Damborsky
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

Review 8.  Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells.

Authors:  Robert H Newman; Matthew D Fosbrink; Jin Zhang
Journal:  Chem Rev       Date:  2011-04-01       Impact factor: 60.622

9.  Exploring the challenges of computational enzyme design by rebuilding the active site of a dehalogenase.

Authors:  Garima Jindal; Katerina Slanska; Veselin Kolev; Jiri Damborsky; Zbynek Prokop; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-26       Impact factor: 11.205

10.  Mechanism of enhanced conversion of 1,2,3-trichloropropane by mutant haloalkane dehalogenase revealed by molecular modeling.

Authors:  Pavel Banás; Michal Otyepka; Petr Jerábek; Martin Petrek; Jirí Damborský
Journal:  J Comput Aided Mol Des       Date:  2006-10-03       Impact factor: 3.686

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