Literature DB >> 23722854

Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17.

Katsiaryna Tratsiak1, Oksana Degtjarik, Ivana Drienovska, Lukas Chrast, Pavlina Rezacova, Michal Kuty, Radka Chaloupkova, Jiri Damborsky, Ivana Kuta Smatanova.   

Abstract

Haloalkane dehalogenases are hydrolytic enzymes with a broad range of potential practical applications such as biodegradation, biosensing, biocatalysis and cellular imaging. Two newly isolated psychrophilic haloalkane dehalogenases exhibiting interesting catalytic properties, DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17, were purified and used for crystallization experiments. After the optimization of crystallization conditions, crystals of diffraction quality were obtained. Diffraction data sets were collected for native enzymes and complexes with selected ligands such as 1-bromohexane and 1,2-dichloroethane to resolutions ranging from 1.05 to 2.49 Å.

Entities:  

Keywords:  DmxA; DpcA; Marinobacter sp. ELB17; Psychrobacter cryohalolentis K5; haloalkane dehalogenases

Mesh:

Substances:

Year:  2013        PMID: 23722854      PMCID: PMC3668595          DOI: 10.1107/S1744309113012979

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  32 in total

Review 1.  Evolving haloalkane dehalogenases.

Authors:  Dick B Janssen
Journal:  Curr Opin Chem Biol       Date:  2004-04       Impact factor: 8.822

2.  Structure and activity of DmmA, a marine haloalkane dehalogenase.

Authors:  Jennifer J Gehret; Liangcai Gu; Todd W Geders; William Clay Brown; Lena Gerwick; William H Gerwick; David H Sherman; Janet L Smith
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

3.  Crystallization and preliminary X-ray diffraction studies of the putative haloalkane dehalogenase DppA from Plesiocystis pacifica SIR-I.

Authors:  Xenia Bogdanović; Martin Hesseler; Gottfried J Palm; Uwe T Bornscheuer; Winfried Hinrichs
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-06-24

Review 4.  Haloalkane dehalogenases: biotechnological applications.

Authors:  Tana Koudelakova; Sarka Bidmanova; Pavel Dvorak; Antonin Pavelka; Radka Chaloupkova; Zbynek Prokop; Jiri Damborsky
Journal:  Biotechnol J       Date:  2012-09-11       Impact factor: 4.677

5.  Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15 A resolution.

Authors:  I S Ridder; H J Rozeboom; B W Dijkstra
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-07

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Haloalkane dehalogenases: structure of a Rhodococcus enzyme.

Authors:  J Newman; T S Peat; R Richard; L Kan; P E Swanson; J A Affholter; I H Holmes; J F Schindler; C J Unkefer; T C Terwilliger
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

8.  Crystallization and preliminary X-ray diffraction analysis of the wild-type haloalkane dehalogenase DhaA and its variant DhaA13 complexed with different ligands.

Authors:  Alena Stsiapanava; Radka Chaloupkova; Andrea Fortova; Jiri Brynda; Manfred S Weiss; Jiri Damborsky; Ivana Kuta Smatanova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-01-22

9.  Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin.

Authors:  Uwe Mueller; Nora Darowski; Martin R Fuchs; Ronald Förster; Michael Hellmig; Karthik S Paithankar; Sandra Pühringer; Michael Steffien; Georg Zocher; Manfred S Weiss
Journal:  J Synchrotron Radiat       Date:  2012-03-20       Impact factor: 2.616

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  3 in total

Review 1.  Psychrophilic enzymes: structural adaptation, pharmaceutical and industrial applications.

Authors:  Sepideh Parvizpour; Nurulfarhana Hussin; Mohd Shahir Shamsir; Jafar Razmara
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-11       Impact factor: 4.813

Review 2.  Dehalogenases: From Improved Performance to Potential Microbial Dehalogenation Applications.

Authors:  Thiau-Fu Ang; Jonathan Maiangwa; Abu Bakar Salleh; Yahaya M Normi; Thean Chor Leow
Journal:  Molecules       Date:  2018-05-07       Impact factor: 4.411

3.  Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.

Authors:  Lukas Chrast; Katsiaryna Tratsiak; Joan Planas-Iglesias; Lukas Daniel; Tatyana Prudnikova; Jan Brezovsky; David Bednar; Ivana Kuta Smatanova; Radka Chaloupkova; Jiri Damborsky
Journal:  Microorganisms       Date:  2019-10-28
  3 in total

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