Literature DB >> 1502151

Serine tRNA complementary to the nonuniversal serine codon CUG in Candida cylindracea: evolutionary implications.

T Yokogawa1, T Suzuki, T Ueda, M Mori, T Ohama, Y Kuchino, S Yoshinari, I Motoki, K Nishikawa, S Osawa.   

Abstract

In the asporogenic yeast Candida cylindracea, the codon CUG is read as serine instead of leucine. This is an unusual instance in which the amino acid assignment of a codon deviates from the universal code. To infer the evolutionary process of this change, the tRNA with the anticodon sequence CAG, which is complementary to and thus responsible for translation of the codon CUG, has been identified. Indeed, this tRNA translates an in-frame CUG codon in a synthetic mRNA as serine in an in vitro translation system. The gene for the tRNA is interrupted by an intron in the anticodon loop. Sequence comparisons of the tRNA and its gene suggest that a single cytidine was inserted into the anticodon loop of the gene for tRNA(Ser)IGA during evolution to produce tRNA(Ser)CAG. The tRNA(Ser)CAG may be produced from its precursor molecule containing the cytidine insertion by splicing.

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Year:  1992        PMID: 1502151      PMCID: PMC49719          DOI: 10.1073/pnas.89.16.7408

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.

Authors:  R Higuchi; B Krummel; R K Saiki
Journal:  Nucleic Acids Res       Date:  1988-08-11       Impact factor: 16.971

2.  The codon CUG is read as serine in an asporogenic yeast Candida cylindracea.

Authors:  Y Kawaguchi; H Honda; J Taniguchi-Morimura; S Iwasaki
Journal:  Nature       Date:  1989-09-14       Impact factor: 49.962

3.  Evolution of an active-site codon in serine proteases.

Authors:  D M Irwin
Journal:  Nature       Date:  1988-12-01       Impact factor: 49.962

4.  Codon recognition patterns as deduced from sequences of the complete set of transfer RNA species in Mycoplasma capricolum. Resemblance to mitochondria.

Authors:  Y Andachi; F Yamao; A Muto; S Osawa
Journal:  J Mol Biol       Date:  1989-09-05       Impact factor: 5.469

5.  Isolation and characterization of the actin gene from Tetrahymena thermophila.

Authors:  C G Cupples; R E Pearlman
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

6.  Deviation from the universal code shown by the gene for surface protein 51A in Paramecium.

Authors:  J R Preer; L B Preer; B M Rudman; A J Barnett
Journal:  Nature       Date:  1985 Mar 14-20       Impact factor: 49.962

7.  The preparation and characterization of a cell-free system from Saccharomyces cerevisiae that translates natural messenger ribonucleic acid.

Authors:  E Gasior; F Herrera; I Sadnik; C S McLaughlin; K Moldave
Journal:  J Biol Chem       Date:  1979-05-25       Impact factor: 5.157

8.  The molecular evolution of genes and proteins: a tale of two serines.

Authors:  S Brenner
Journal:  Nature       Date:  1988-08-11       Impact factor: 49.962

9.  An unusual genetic code in nuclear genes of Tetrahymena.

Authors:  S Horowitz; M A Gorovsky
Journal:  Proc Natl Acad Sci U S A       Date:  1985-04       Impact factor: 11.205

10.  Dramatic events in ciliate evolution: alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs.

Authors:  N Hanyu; Y Kuchino; S Nishimura; H Beier
Journal:  EMBO J       Date:  1986-06       Impact factor: 11.598

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  33 in total

1.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

Review 2.  Structure, function and evolution of seryl-tRNA synthetases: implications for the evolution of aminoacyl-tRNA synthetases and the genetic code.

Authors:  M Härtlein; S Cusack
Journal:  J Mol Evol       Date:  1995-05       Impact factor: 2.395

3.  On malleability in the genetic code.

Authors:  D W Schultz; M Yarus
Journal:  J Mol Evol       Date:  1996-05       Impact factor: 2.395

4.  CUG codons in Candida spp..

Authors:  T H Jukes; S Osawa
Journal:  J Mol Evol       Date:  1996-02       Impact factor: 2.395

5.  Further comments on codon reassignment.

Authors:  T H Jukes; S Osawa
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

6.  Transfer RNA docking pair model in the ribosomal pre- and post-translocational states.

Authors:  K Nagano; N Nagano
Journal:  Nucleic Acids Res       Date:  1997-03-15       Impact factor: 16.971

Review 7.  Dual functions of codons in the genetic code.

Authors:  Alexey V Lobanov; Anton A Turanov; Dolph L Hatfield; Vadim N Gladyshev
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-08       Impact factor: 8.250

8.  Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp.

Authors:  Steven E Massey; Gabriela Moura; Pedro Beltrão; Ricardo Almeida; James R Garey; Mick F Tuite; Manuel A S Santos
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

9.  The "universal" leucine codon CTG in the secreted aspartyl proteinase 1 (SAP1) gene of Candida albicans encodes a serine in vivo.

Authors:  T C White; L E Andrews; D Maltby; N Agabian
Journal:  J Bacteriol       Date:  1995-05       Impact factor: 3.490

10.  Functional characterization of the MKC1 gene of Candida albicans, which encodes a mitogen-activated protein kinase homolog related to cell integrity.

Authors:  F Navarro-García; M Sánchez; J Pla; C Nombela
Journal:  Mol Cell Biol       Date:  1995-04       Impact factor: 4.272

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