Literature DB >> 20550913

Kinetic hysteresis in collagen folding.

Kazunori Mizuno1, Sergei P Boudko, Jürgen Engel, Hans Peter Bächinger.   

Abstract

The triple helix of collagen shows a steep unfolding transition upon heating, whereas less steep and more gradual refolding is observed upon cooling. The shape of the hysteresis loop depends on the rate of temperature change as well as the peptide concentration. Experimental heating and cooling rates are usually much faster than rates of unfolding and refolding. In this work, collagen model peptides were used to study hysteresis quantitatively. Their unfolding and refolding profiles were recorded at different heating and cooling rates, and at different peptide concentrations. Data were fitted assuming kinetic mechanisms in which three chains combine to a helix with or without an intermediate that acts as a nucleus. A quantitative fit was achieved with the same kinetic model for the forward and backward reactions. Transitions of exogenously trimerized collagen models were also analyzed with a simplified kinetic mechanism. It follows that true equilibrium transitions can only be measured at high concentrations of polypeptide chains with slow scanning rates, for example, 0.1 degrees C/h at 0.25 mM peptide concentration of (Gly-Pro-Pro)(10). (Gly-Pro-4(R)Hyp)(10) folds approximately 2000 times faster than (Gly-Pro-Pro)(10). This was explained by a more stable nucleus, whereas the rate of propagation was almost equal. The analysis presented here can be used to derive kinetic and thermodynamic data for collagenous and other systems with kinetically controlled hysteresis. (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20550913      PMCID: PMC2884267          DOI: 10.1016/j.bpj.2010.03.019

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

1.  Collagen triple helix formation can be nucleated at either end.

Authors:  Sabine Frank; Sergei Boudko; Kazunori Mizuno; Therese Schulthess; Jürgen Engel; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2003-01-22       Impact factor: 5.157

2.  Equilibrium thermal transitions of collagen model peptides.

Authors:  Anton V Persikov; Yujia Xu; Barbara Brodsky
Journal:  Protein Sci       Date:  2004-03-09       Impact factor: 6.725

Review 3.  The zipper-like folding of collagen triple helices and the effects of mutations that disrupt the zipper.

Authors:  J Engel; D J Prockop
Journal:  Annu Rev Biophys Biophys Chem       Date:  1991

4.  Hysteresis in the triple helix-coil transition of type III collagen.

Authors:  J M Davis; H P Bächinger
Journal:  J Biol Chem       Date:  1993-12-05       Impact factor: 5.157

5.  Folding mechanism of the triple helix in type-III collagen and type-III pN-collagen. Role of disulfide bridges and peptide bond isomerization.

Authors:  H P Bächinger; P Bruckner; R Timpl; D J Prockop; J Engel
Journal:  Eur J Biochem       Date:  1980-05

6.  Nucleation and propagation of the collagen triple helix in single-chain and trimerized peptides: transition from third to first order kinetics.

Authors:  Sergei Boudko; Sabine Frank; Richard A Kammerer; Jörg Stetefeld; Therese Schulthess; Ruth Landwehr; Ariel Lustig; Hans Peter Bächinger; Jürgen Engel
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

7.  Complex of human apolipoprotein C-1 with phospholipid: thermodynamic or kinetic stability?

Authors:  Olga Gursky; Donald L Gantz
Journal:  Biochemistry       Date:  2002-06-11       Impact factor: 3.162

8.  Hydroxylation-induced stabilization of the collagen triple helix. Acetyl-(glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)(10)-NH(2) forms a highly stable triple helix.

Authors:  Kazunori Mizuno; Toshihiko Hayashi; David H Peyton; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2004-07-01       Impact factor: 5.157

9.  The triple helix in equilibrium with coil conversion of collagen-like polytripeptides in aqueous and nonaqueous solvents. Comparison of the thermodynamic parameters and the binding of water to (L-Pro-L-Pro-Gly)n and (L-Pro-L-Hyp-Gly)n.

Authors:  J Engel; H T Chen; D J Prockop; H Klump
Journal:  Biopolymers       Date:  1977-03       Impact factor: 2.505

10.  Observed hysteresis of virus capsid disassembly is implicit in kinetic models of assembly.

Authors:  Sushmita Singh; Adam Zlotnick
Journal:  J Biol Chem       Date:  2003-03-13       Impact factor: 5.157

View more
  17 in total

1.  The NC2 domain of type IX collagen determines the chain register of the triple helix.

Authors:  Sergei P Boudko; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2012-11-06       Impact factor: 5.157

2.  Heterogeneous side chain conformation highlights a network of interactions implicated in hysteresis of the knotted protein, minimal tied trefoil.

Authors:  David J Burban; Ellinor Haglund; Dominique T Capraro; Patricia A Jennings
Journal:  J Phys Condens Matter       Date:  2015-08-20       Impact factor: 2.333

3.  Interstrand dipole-dipole interactions can stabilize the collagen triple helix.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  J Biol Chem       Date:  2011-04-10       Impact factor: 5.157

4.  Kinetic control in protein folding for light chain amyloidosis and the differential effects of somatic mutations.

Authors:  Luis M Blancas-Mejía; Alexander Tischer; James R Thompson; Jonathan Tai; Lin Wang; Matthew Auton; Marina Ramirez-Alvarado
Journal:  J Mol Biol       Date:  2013-10-22       Impact factor: 5.469

5.  A Single Stereodynamic Center Modulates the Rate of Self-Assembly in a Biomolecular System.

Authors:  Yitao Zhang; Roy M Malamakal; David M Chenoweth
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-23       Impact factor: 15.336

6.  Vascular Ehlers-Danlos syndrome mutations in type III collagen differently stall the triple helical folding.

Authors:  Kazunori Mizuno; Sergei Boudko; Jürgen Engel; Hans Peter Bächinger
Journal:  J Biol Chem       Date:  2013-05-03       Impact factor: 5.157

7.  The effect of purity upon the triple-helical stability of collagenous peptides.

Authors:  David A Slatter; Dominique G Bihan; Richard W Farndale
Journal:  Biomaterials       Date:  2011-06-12       Impact factor: 12.479

Review 8.  Theory and applications of differential scanning fluorimetry in early-stage drug discovery.

Authors:  Kai Gao; Rick Oerlemans; Matthew R Groves
Journal:  Biophys Rev       Date:  2020-01-31

9.  Imaging of type I procollagen biosynthesis in cells reveals biogenesis in highly organized bodies; Collagenosomes.

Authors:  Branko Stefanovic; Lela Stefanovic; Zarko Manojlovic
Journal:  Matrix Biol Plus       Date:  2021-06-23

10.  Mapping the energy landscapes of supramolecular assembly by thermal hysteresis.

Authors:  Robert W Harkness V; Nicole Avakyan; Hanadi F Sleiman; Anthony K Mittermaier
Journal:  Nat Commun       Date:  2018-08-08       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.