Literature DB >> 15002671

Tissue- and stage-specific RNA editing of rps 14 transcripts in moss (Physcomitrella patens) chloroplasts.

Yuki Miyata1, Mamoru Sugita.   

Abstract

The C to U editing event that converts an ACG codon to an AUG translation initiation codon in the chloroplast rps 14 transcript is unique to the moss Physcomitrella patens and has not been found in other species. The efficiency of RNA editing was 80% in the young protonemata and decreased to approximately 20% in old protonemata and fully developed leafy shoots. This indicates that RNA editing of this site is regulated in a tissue- and stage-specific manner. In this study, a novel C to U RNA editing site has been identified at the -1 position relative to the AUG. Because the editing site is localized in the mRNA 5' untranslated region, it may affect the efficiency of rps 14 mRNA translation.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15002671     DOI: 10.1078/0176-1617-01220

Source DB:  PubMed          Journal:  J Plant Physiol        ISSN: 0176-1617            Impact factor:   3.549


  25 in total

Review 1.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

2.  Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues.

Authors:  Ching-Chih Tseng; Chih-Jen Lee; Yi-Ting Chung; Tzu-Ying Sung; Ming-Hsiun Hsieh
Journal:  Plant Mol Biol       Date:  2013-05-06       Impact factor: 4.076

3.  The moss Physcomitrella patens, a model plant for the study of RNA editing in plant organelles.

Authors:  Eiji Tasaki; Mamoru Sugita
Journal:  Plant Signal Behav       Date:  2010-06-01

4.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

5.  The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing.

Authors:  Atsushi Sadamitsu; Yuya Inoue; Keiko Sakakibara; Hiromi Tsubota; Tomio Yamaguchi; Hironori Deguchi; Tomoaki Nishiyama; Masaki Shimamura
Journal:  Plant Mol Biol       Date:  2021-11-24       Impact factor: 4.076

6.  Unparalleled GC content in the plastid DNA of Selaginella.

Authors:  David Roy Smith
Journal:  Plant Mol Biol       Date:  2009-09-23       Impact factor: 4.076

7.  Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein.

Authors:  Sabine Kahlau; Ralph Bock
Journal:  Plant Cell       Date:  2008-04-25       Impact factor: 11.277

8.  RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal.

Authors:  Mareike Rüdinger; Helena T Funk; Stefan A Rensing; Uwe G Maier; Volker Knoop
Journal:  Mol Genet Genomics       Date:  2009-01-24       Impact factor: 3.291

9.  PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.

Authors:  Henning Lenz; Volker Knoop
Journal:  Bioinform Biol Insights       Date:  2013-01-10

10.  The chloroplast genome of Pellia endiviifolia: gene content, RNA-editing pattern, and the origin of chloroplast editing.

Authors:  Christopher Grosche; Helena T Funk; Uwe G Maier; Stefan Zauner
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.