Literature DB >> 20383068

The moss Physcomitrella patens, a model plant for the study of RNA editing in plant organelles.

Eiji Tasaki1, Mamoru Sugita.   

Abstract

RNA editing is an enigmatic phenomenon in which specific cytidines (C) in the transcripts are changed to uridines (U). In flowering plants, over 500 editing sites have been identified in the mitochondria and plastids. By contrast, in a moss Physcomitrella patens, only 12 editing sites are found in both organelles. Recent extensive genetics studies have revealed involvement of the pentatricopeptide repeat (PPR) proteins with a C-terminal DYW domain (PPR-DYW) in site-specific RNA editing events. Flowering plants have ~100 PPR-DYW genes while P. patens has only 10 PPR-DYW genes. Thus, the number of PPR-DYW genes is somewhat related to the number of RNA editing sites. The P. patens gametophyte, the haploid phase of the life cycle, is dominant, making it possible to study the phenotype of knockouts directly after transformation for gene-targeting. This makes it easier to identify the PPR-DYW proteins required for RNA editing. Recently, we have shown that one of 10 PPR-DYW proteins, PpPPR_71, was responsible for RNA editing in the mitochondrial ccmFc mRNA. In this study, we propose a working model of PpPPR_71 function on RNA editing.

Entities:  

Year:  2010        PMID: 20383068      PMCID: PMC3001572          DOI: 10.4161/psb.5.6.11664

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  23 in total

1.  CcmF(C) involved in cytochrome c maturation is present in a large sized complex in wheat mitochondria.

Authors:  Philippe Giegé; Naganand Rayapuram; Etienne H Meyer; Jean Michel Grienenberger; Géraldine Bonnard
Journal:  FEBS Lett       Date:  2004-04-09       Impact factor: 4.124

2.  A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts.

Authors:  Emi Kotera; Masao Tasaka; Toshiharu Shikanai
Journal:  Nature       Date:  2005-01-20       Impact factor: 49.962

3.  A hypothesis on the identification of the editing enzyme in plant organelles.

Authors:  Véronique Salone; Mareike Rüdinger; Monika Polsakiewicz; Beate Hoffmann; Milena Groth-Malonek; Boris Szurek; Ian Small; Volker Knoop; Claire Lurin
Journal:  FEBS Lett       Date:  2007-08-10       Impact factor: 4.124

4.  LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis.

Authors:  Wenhe Cai; Daili Ji; Lianwei Peng; Jinkui Guo; Jinfang Ma; Meijuan Zou; Congming Lu; Lixin Zhang
Journal:  Plant Physiol       Date:  2009-05-15       Impact factor: 8.340

5.  Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.

Authors:  Kenji Okuda; Anne-Laure Chateigner-Boutin; Takahiro Nakamura; Etienne Delannoy; Mamoru Sugita; Fumiyoshi Myouga; Reiko Motohashi; Kazuo Shinozaki; Ian Small; Toshiharu Shikanai
Journal:  Plant Cell       Date:  2009-01-30       Impact factor: 11.277

6.  On the expansion of the pentatricopeptide repeat gene family in plants.

Authors:  Nicholas O'Toole; Mitsuru Hattori; Charles Andres; Kei Iida; Claire Lurin; Christian Schmitz-Linneweber; Mamoru Sugita; Ian Small
Journal:  Mol Biol Evol       Date:  2008-03-14       Impact factor: 16.240

7.  The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth.

Authors:  Wenbin Zhou; Yuxiang Cheng; Aaron Yap; Anne-Laure Chateigner-Boutin; Etienne Delannoy; Kamel Hammani; Ian Small; Jirong Huang
Journal:  Plant J       Date:  2008-12-29       Impact factor: 6.417

8.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

9.  A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript.

Authors:  John C Robbins; Wade P Heller; Maureen R Hanson
Journal:  RNA       Date:  2009-04-24       Impact factor: 4.942

10.  AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.

Authors:  Qing-Bo Yu; Yan Jiang; Kang Chong; Zhong-Nan Yang
Journal:  Plant J       Date:  2009-05-28       Impact factor: 6.417

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  3 in total

1.  Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes.

Authors:  Julia Hecht; Felix Grewe; Volker Knoop
Journal:  Genome Biol Evol       Date:  2011-03-23       Impact factor: 3.416

2.  Deep Transcriptome Sequencing of Two Green Algae, Chara vulgaris and Chlamydomonas reinhardtii,  Provides No Evidence of Organellar RNA Editing.

Authors:  A Bruce Cahoon; John A Nauss; Conner D Stanley; Ali Qureshi
Journal:  Genes (Basel)       Date:  2017-02-20       Impact factor: 4.096

Review 3.  Architecture of the PPR gene family in the moss Physcomitrella patens.

Authors:  Mamoru Sugita; Mizuho Ichinose; Mizuki Ide; Chieko Sugita
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

  3 in total

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