Literature DB >> 14990804

CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaea.

Jesse D Woodson1, Jorge C Escalante-Semerena.   

Abstract

The existence of a pathway for salvaging the coenzyme B(12) precursor dicyanocobinamide (Cbi) from the environment was established by genetic and biochemical means. The pathway requires the function of a previously unidentified amidohydrolase enzyme that converts adenosylcobinamide to adenosylcobyric acid, a bona fide intermediate of the de novo coenzyme B(12) biosynthetic route. The cbiZ gene of the methanogenic archaeon Methanosarcina mazei strain Göl was cloned, was overproduced in Escherichia coli, and the recombinant protein was isolated to homogeneity. HPLC, UV-visible spectroscopy, MS, and bioassay data established adenosylcobyric as the corrinoid product of the CbiZ-catalyzed reaction. Inactivation of the cbiZ gene in the extremely halophilic archaeon Halobacterium sp. strain NRC-1 blocked the ability of this archaeon to salvage Cbi. cbiZ function restored Cbi salvaging in a strain of the bacterium Salmonella enterica, whose Cbi-salvaging pathway was blocked. The salvaging of Cbi through the CbiZ enzyme appears to be an archaeal strategy because all of the genomes of B(12)-producing archaea have a cbiZ ortholog. Reasons for the evolution of two distinct pathways for Cbi salvaging in prokaryotes are discussed.

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Year:  2004        PMID: 14990804      PMCID: PMC373507          DOI: 10.1073/pnas.0305939101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

Review 1.  Biosynthesis of cobalamin (vitamin B(12)).

Authors:  A I Scott; C A Roessner
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

2.  The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.

Authors:  J D Woodson; R F Peck; M P Krebs; J C Escalante-Semerena
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

3.  Transformation in restriction-deficient Salmonella typhimurium LT2.

Authors:  S P Tsai; R J Hartin; J Ryu
Journal:  J Gen Microbiol       Date:  1989-09

4.  An in vitro reducing system for the enzymic conversion of cobalamin to adenosylcobalamin.

Authors:  M V Fonseca; J C Escalante-Semerena
Journal:  J Biol Chem       Date:  2001-06-14       Impact factor: 5.157

5.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  Three-dimensional structure of ATP:corrinoid adenosyltransferase from Salmonella typhimurium in its free state, complexed with MgATP, or complexed with hydroxycobalamin and MgATP.

Authors:  C B Bauer; M V Fonseca; H M Holden; J B Thoden; T B Thompson; J C Escalante-Semerena; I Rayment
Journal:  Biochemistry       Date:  2001-01-16       Impact factor: 3.162

7.  Identification and quantitation of corrinoid precursors of cobalamin from Pseudomonas denitrificans by high-performance liquid chromatography.

Authors:  F Blanche; D Thibaut; M Couder; J C Muller
Journal:  Anal Biochem       Date:  1990-08-15       Impact factor: 3.365

8.  The ATP:Co(I)rrinoid adenosyltransferase (CobA) enzyme of Salmonella enterica requires the 2'-OH group of ATP for function and yields inorganic triphosphate as its reaction byproduct.

Authors:  Maris V Fonseca; Nicole R Buan; Alexander R Horswill; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  J Biol Chem       Date:  2002-06-21       Impact factor: 5.157

Review 9.  The biosynthesis of adenosylcobalamin (vitamin B12).

Authors:  Martin J Warren; Evelyne Raux; Heidi L Schubert; Jorge C Escalante-Semerena
Journal:  Nat Prod Rep       Date:  2002-08       Impact factor: 13.423

10.  A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity.

Authors:  Jesse D Woodson; Carmen L Zayas; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2003-12       Impact factor: 3.490

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  38 in total

1.  Unexpected specificity of interspecies cobamide transfer from Geobacter spp. to organohalide-respiring Dehalococcoides mccartyi strains.

Authors:  Jun Yan; Kirsti M Ritalahti; Darlene D Wagner; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

2.  The cbiS gene of the archaeon Methanopyrus kandleri AV19 encodes a bifunctional enzyme with adenosylcobinamide amidohydrolase and alpha-ribazole-phosphate phosphatase activities.

Authors:  Jesse D Woodson; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

3.  Reassessment of the late steps of coenzyme B12 synthesis in Salmonella enterica: evidence that dephosphorylation of adenosylcobalamin-5'-phosphate by the CobC phosphatase is the last step of the pathway.

Authors:  Carmen L Zayas; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-01-05       Impact factor: 3.490

Review 4.  Conversion of cobinamide into adenosylcobamide in bacteria and archaea.

Authors:  Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-05-04       Impact factor: 3.490

5.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Authors:  Toshiaki Fukui; Haruyuki Atomi; Tamotsu Kanai; Rie Matsumi; Shinsuke Fujiwara; Tadayuki Imanaka
Journal:  Genome Res       Date:  2005-02-14       Impact factor: 9.043

6.  The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins.

Authors:  Michael J Gray; Norbert K Tavares; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2008-09-18       Impact factor: 3.501

7.  Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.

Authors:  Chi Ho Chan; Sean A Newmister; Keenan Talyor; Kathy R Claas; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Biochim Biophys Acta       Date:  2013-10-10

8.  The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system of Rhodobacter sphaeroides.

Authors:  Michael J Gray; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2009-11-02       Impact factor: 3.501

9.  ABC transporter for corrinoids in Halobacterium sp. strain NRC-1.

Authors:  Jesse D Woodson; April A Reynolds; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

10.  The CbiB protein of Salmonella enterica is an integral membrane protein involved in the last step of the de novo corrin ring biosynthetic pathway.

Authors:  Carmen L Zayas; Kathy Claas; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-09-07       Impact factor: 3.490

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