Literature DB >> 16740929

The cbiS gene of the archaeon Methanopyrus kandleri AV19 encodes a bifunctional enzyme with adenosylcobinamide amidohydrolase and alpha-ribazole-phosphate phosphatase activities.

Jesse D Woodson1, Jorge C Escalante-Semerena.   

Abstract

Here we report the initial biochemical characterization of the bifunctional alpha-ribazole-P (alpha-RP) phosphatase, adenosylcobinamide (AdoCbi) amidohydrolase CbiS enzyme from the hyperthermophilic methanogenic archaeon Methanopyrus kandleri AV19. The cbiS gene encodes a 39-kDa protein with two distinct segments, one of which is homologous to the AdoCbi amidohydrolase (CbiZ, EC 3.5.1.90) enzyme and the other of which is homologous to the recently discovered archaeal alpha-RP phosphatase (CobZ, EC 3.1.3.73) enzyme. CbiS function restored AdoCbi salvaging and alpha-RP phosphatase activity in strains of the bacterium Salmonella enterica where either step was blocked. The two halves of the cbiS genes retained their function in vivo when they were cloned separately. The CbiS enzyme was overproduced in Escherichia coli and was isolated to >95% homogeneity. High-performance liquid chromatography, UV-visible spectroscopy, and mass spectroscopy established alpha-ribazole and cobyric acid as the products of the phosphatase and amidohydrolase reactions, respectively. Reasons why the CbiZ and CobZ enzymes are fused in some archaea are discussed.

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Year:  2006        PMID: 16740929      PMCID: PMC1482944          DOI: 10.1128/JB.00227-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  37 in total

1.  Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes.

Authors:  I Yanai; A Derti; C DeLisi
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

2.  The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase.

Authors:  M Y Galperin; N V Grishin
Journal:  Proteins       Date:  2000-11-01

3.  The CobII and CobIII regions of the cobalamin (vitamin B12) biosynthetic operon of Salmonella typhimurium.

Authors:  J C Escalante-Semerena; M G Johnson; J R Roth
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

4.  Salmonella typhimurium forms adenylcobamide and 2-methyladenylcobamide, but no detectable cobalamin during strictly anaerobic growth.

Authors:  B Keck; P Renz
Journal:  Arch Microbiol       Date:  2000-01       Impact factor: 2.552

5.  A Salmonella typhimurium cobalamin-deficient mutant blocked in 1-amino-2-propanol synthesis.

Authors:  C Grabau; J R Roth
Journal:  J Bacteriol       Date:  1992-04       Impact factor: 3.490

6.  Identification of an alternative nucleoside triphosphate: 5'-deoxyadenosylcobinamide phosphate nucleotidyltransferase in Methanobacterium thermoautotrophicum delta H.

Authors:  M G Thomas; J C Escalante-Semerena
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

7.  Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum.

Authors:  P Völkl; R Huber; E Drobner; R Rachel; S Burggraf; A Trincone; K O Stetter
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

8.  The cobC gene of Salmonella typhimurium codes for a novel phosphatase involved in the assembly of the nucleotide loop of cobalamin.

Authors:  G A O'Toole; J R Trzebiatowski; J C Escalante-Semerena
Journal:  J Biol Chem       Date:  1994-10-21       Impact factor: 5.157

9.  An archaeal genomic signature.

Authors:  D E Graham; R Overbeek; G J Olsen; C R Woese
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

10.  How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase.

Authors:  C L Drennan; S Huang; J T Drummond; R G Matthews; M L Ludwig
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

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  10 in total

Review 1.  Conversion of cobinamide into adenosylcobamide in bacteria and archaea.

Authors:  Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-05-04       Impact factor: 3.490

2.  The Methanosarcina mazei MM2060 Gene Encodes a Bifunctional Kinase/Decarboxylase Enzyme Involved in Cobamide Biosynthesis.

Authors:  Norbert K Tavares; Carmen L Zayas; Jorge C Escalante-Semerena
Journal:  Biochemistry       Date:  2018-07-13       Impact factor: 3.162

3.  The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins.

Authors:  Michael J Gray; Norbert K Tavares; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2008-09-18       Impact factor: 3.501

4.  Dissecting cobamide diversity through structural and functional analyses of the base-activating CobT enzyme of Salmonella enterica.

Authors:  Chi Ho Chan; Sean A Newmister; Keenan Talyor; Kathy R Claas; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Biochim Biophys Acta       Date:  2013-10-10

5.  The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system of Rhodobacter sphaeroides.

Authors:  Michael J Gray; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2009-11-02       Impact factor: 3.501

6.  In vivo analysis of cobinamide salvaging in Rhodobacter sphaeroides strain 2.4.1.

Authors:  Michael J Gray; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

7.  The thiamine kinase (YcfN) enzyme plays a minor but significant role in cobinamide salvaging in Salmonella enterica.

Authors:  Michele M Otte; Jesse D Woodson; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-08-10       Impact factor: 3.490

8.  Metabolic Flux Analysis of Simultaneous Production of Vitamin B12 and Propionic Acid in a Coupled Fermentation Process by Propionibacterium freudenreichii.

Authors:  Yuhan Zhang; Xiaolian Li; Ziqiang Wang; Yunshan Wang; Yuanyuan Ma; Zhiguo Su
Journal:  Appl Biochem Biotechnol       Date:  2021-05-15       Impact factor: 2.926

9.  More than 200 genes required for methane formation from H₂ and CO₂ and energy conservation are present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus.

Authors:  Anne-Kristin Kaster; Meike Goenrich; Henning Seedorf; Heiko Liesegang; Antje Wollherr; Gerhard Gottschalk; Rudolf K Thauer
Journal:  Archaea       Date:  2011-04-27       Impact factor: 3.273

10.  Structural studies of the phosphoribosyltransferase involved in cobamide biosynthesis in methanogenic archaea and cyanobacteria.

Authors:  Victoria L Jeter; Anne H Schwarzwalder; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Sci Rep       Date:  2022-10-13       Impact factor: 4.996

  10 in total

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