Literature DB >> 14764934

Isolation of functional RNA from small amounts of different grape and apple tissues.

Claudio Moser1, Pamela Gatto, Mirko Moser, Massimo Pindo, Riccardo Velasco.   

Abstract

An efficient, simple, and small-scale procedure for isolating functional ribonucleic acid (RNA) was successfully applied to many different tissues of grape and apple. These woody plants are rich in polyphenolic compounds and polysaccharides that could impair the RNA extraction. The method chosen is based on the use of hot borate buffer at alkaline pH supplemented with several adjuvants and followed by selective precipitations. Starting with only 0.4 g of fresh tissue and working with small tubes (2 mL), we were able to obtain good yields of high-quality RNA suitable for further applications. The procedure can be proposed for many applications, and it is particularly highly recommended when isolating RNA from a large number of samples.

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Year:  2004        PMID: 14764934     DOI: 10.1385/MB:26:2:95

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  11 in total

1.  Isolation and purification of functional total RNA from woody branches and needles of Sitka and white spruce.

Authors:  S X Wang; W Hunter; A Plant
Journal:  Biotechniques       Date:  2000-02       Impact factor: 1.993

2.  An efficient method for isolation of RNA and DNA from plants containing polyphenolics.

Authors:  M E John
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

3.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

4.  Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit.

Authors:  L Jaakola; A M Pirttilä; M Halonen; A Hohtola
Journal:  Mol Biotechnol       Date:  2001-10       Impact factor: 2.695

5.  Characterization of MdMADS2, a member of the SQUAMOSA subfamily of genes, in apple.

Authors:  S K Sung; G H Yu; G An
Journal:  Plant Physiol       Date:  1999-08       Impact factor: 8.340

6.  Isolation of functional RNA from plant tissues rich in phenolic compounds.

Authors:  A Schneiderbauer; H Sandermann; D Ernst
Journal:  Anal Biochem       Date:  1991-08-15       Impact factor: 3.365

7.  Messenger RNA for G1 protein of French bean seeds: Cell-free translation and product characterization.

Authors:  T C Hall; Y Ma; B U Buchbinder; J W Pyne; S M Sun; F A Bliss
Journal:  Proc Natl Acad Sci U S A       Date:  1978-07       Impact factor: 11.205

8.  A leucine-rich repeat receptor-like protein kinase (LRPKm1) gene is induced in Malus x domestica by Venturia inaequalis infection and salicylic acid treatment.

Authors:  M Komjanc; S Festi; L Rizzotti; L Cattivelli; F Cervone; G De Lorenzo
Journal:  Plant Mol Biol       Date:  1999-08       Impact factor: 4.076

9.  Apple beta-galactosidase. Activity against cell wall polysaccharides and characterization of a related cDNA clone.

Authors:  G S Ross; T Wegrzyn; E A MacRae; R J Redgwell
Journal:  Plant Physiol       Date:  1994-10       Impact factor: 8.340

10.  A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).

Authors:  C Y Wan; T A Wilkins
Journal:  Anal Biochem       Date:  1994-11-15       Impact factor: 3.365

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  20 in total

1.  An improved protocol for the isolation of RNA from roots of tea (Camellia sinensis (L.) O. Kuntze).

Authors:  Richard Chalo Muoki; Asosii Paul; Anita Kumari; Kashmir Singh; Sanjay Kumar
Journal:  Mol Biotechnol       Date:  2012-09       Impact factor: 2.695

2.  A rapid and efficient method for isolating high quality DNA from leaves of carnivorous plants from the Drosera genus.

Authors:  Flore Biteau; Estelle Nisse; Alain Hehn; Sissi Miguel; Paul Hannewald; Frédéric Bourgaud
Journal:  Mol Biotechnol       Date:  2012-07       Impact factor: 2.695

3.  Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L.

Authors:  C Moser; C Segala; P Fontana; I Salakhudtinov; P Gatto; M Pindo; E Zyprian; R Toepfer; M S Grando; R Velasco
Journal:  Funct Integr Genomics       Date:  2005-04-22       Impact factor: 3.410

4.  Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides.

Authors:  Reza Heidari Japelaghi; Raheem Haddad; Ghasem-Ali Garoosi
Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

5.  Identification of low temperature stress regulated transcript sequences and gene families in Italian cypress.

Authors:  Nicola La Porta; Gaurav Sablok; Giovanni Emilliani; Ari M Hietala; Alessio Giovannelli; Paolo Fontana; Emilio Potenza; Paolo Baldi
Journal:  Mol Biotechnol       Date:  2015-05       Impact factor: 2.695

6.  RNA extraction from plant tissues: the use of calcium to precipitate contaminating pectic sugars.

Authors:  Valeriano Dal Cin; Marcello Danesin; Fabio Massimo Rizzini; Angelo Ramina
Journal:  Mol Biotechnol       Date:  2005-10       Impact factor: 2.695

7.  Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor.

Authors:  Anita Zamboni; Pamela Gatto; Alessandro Cestaro; Stefania Pilati; Roberto Viola; Fulvio Mattivi; Claudio Moser; Riccardo Velasco
Journal:  BMC Genomics       Date:  2009-08-06       Impact factor: 3.969

8.  A CTAB protocol for obtaining high-quality total RNA from cinnamon (Cinnamomum zeylanicum Blume).

Authors:  Nishadi M N Liyanage; Bhagya C H W M Chandrasekara; Pradeepa C G Bandaranayake
Journal:  3 Biotech       Date:  2021-03-29       Impact factor: 2.406

9.  Isolation and antisense suppression of flavonoid 3', 5'-hydroxylase modifies flower pigments and colour in cyclamen.

Authors:  Murray R Boase; David H Lewis; Kevin M Davies; Gayle B Marshall; Deepa Patel; Kathy E Schwinn; Simon C Deroles
Journal:  BMC Plant Biol       Date:  2010-06-13       Impact factor: 4.215

10.  Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses.

Authors:  Giulia Malacarne; Urska Vrhovsek; Luca Zulini; Alessandro Cestaro; Marco Stefanini; Fulvio Mattivi; Massimo Delledonne; Riccardo Velasco; Claudio Moser
Journal:  BMC Plant Biol       Date:  2011-08-12       Impact factor: 4.215

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