Literature DB >> 16170211

RNA extraction from plant tissues: the use of calcium to precipitate contaminating pectic sugars.

Valeriano Dal Cin1, Marcello Danesin, Fabio Massimo Rizzini, Angelo Ramina.   

Abstract

Several protocols and commercial kits are used for the extraction of nucleic acids from different plant tissues. Although there are several procedures available to remove sugars, which hinder the extraction of clean genomic DNA, there are few to assist with extraction of RNA. Those presently used include precipitations with ethylene glycol monobutyl ether or lithium chloride (LiCl), or centrifugation in cesium chloride (CsCl) gradients, but these generally either do not allow high recovery of RNA, are time consuming, rely on hazardous chemicals or need special equipment. Here we present the use of the simple cation, Ca2+, which has been tested and shown to be very efficient for the precipitation of high molecular weight pectic sugars during RNA extraction. Results are presented for different plant tissues, especially tissues of peach and apple fruits at varying ripening stages.

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Year:  2005        PMID: 16170211     DOI: 10.1385/MB:31:2:113

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  9 in total

1.  Isolation of functional RNA from small amounts of different grape and apple tissues.

Authors:  Claudio Moser; Pamela Gatto; Mirko Moser; Massimo Pindo; Riccardo Velasco
Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

2.  Characterization and expression of two members of the peach 1-aminocyclopropane-1-carboxylate oxidase gene family.

Authors:  Benedetto Ruperti; Claudio Bonghi; Angela Rasori; Angelo Ramina; Pietro Tonutti
Journal:  Physiol Plant       Date:  2001-03       Impact factor: 4.500

3.  Improved method for the isolation of RNA from plant tissues.

Authors:  J Logemann; J Schell; L Willmitzer
Journal:  Anal Biochem       Date:  1987-05-15       Impact factor: 3.365

4.  A method for RNA isolation from marine macro-algae.

Authors:  X Su; A Gibor
Journal:  Anal Biochem       Date:  1988-11-01       Impact factor: 3.365

5.  Isolation of nucleic acids from plants by differential solvent precipitation.

Authors:  K Manning
Journal:  Anal Biochem       Date:  1991-05-15       Impact factor: 3.365

6.  Influence of Ionic Strength, pH, and Chelation of Divalent Metals on Isolation of Polyribosomes from Tobacco Leaves.

Authors:  A O Jackson; B A Larkins
Journal:  Plant Physiol       Date:  1976-01       Impact factor: 8.340

7.  Cell wall metabolism during maturation, ripening and senescence of peach fruit.

Authors:  David A Brummell; V Dal Cin; Carlos H Crisosto; John M Labavitch
Journal:  J Exp Bot       Date:  2004-07-30       Impact factor: 6.992

8.  A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).

Authors:  C Y Wan; T A Wilkins
Journal:  Anal Biochem       Date:  1994-11-15       Impact factor: 3.365

9.  Effect of low molecular size humic substances on nitrate uptake and expression of genes involved in nitrate transport in maize (Zea mays L.).

Authors:  Silvia Quaggiotti; Benedetto Ruperti; Diego Pizzeghello; Ornella Francioso; Vitaliano Tugnoli; Serenella Nardi
Journal:  J Exp Bot       Date:  2004-03-12       Impact factor: 6.992

  9 in total
  10 in total

1.  Signaling pathways mediating the induction of apple fruitlet abscission.

Authors:  Alessandro Botton; Giulia Eccher; Claudio Forcato; Alberto Ferrarini; Maura Begheldo; Monica Zermiani; Stefano Moscatello; Alberto Battistelli; Riccardo Velasco; Benedetto Ruperti; Angelo Ramina
Journal:  Plant Physiol       Date:  2010-10-29       Impact factor: 8.340

2.  Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit.

Authors:  Valeriano Dal Cin; Denise M Tieman; Takayuki Tohge; Ryan McQuinn; Ric C H de Vos; Sonia Osorio; Eric A Schmelz; Mark G Taylor; Miriam T Smits-Kroon; Robert C Schuurink; Michel A Haring; James Giovannoni; Alisdair R Fernie; Harry J Klee
Journal:  Plant Cell       Date:  2011-07-12       Impact factor: 11.277

3.  Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides.

Authors:  Reza Heidari Japelaghi; Raheem Haddad; Ghasem-Ali Garoosi
Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

4.  Profiling gene expression in citrus fruit calyx abscission zone (AZ-C) treated with ethylene.

Authors:  Chunzhen Cheng; Lingyun Zhang; Xuelian Yang; Guangyan Zhong
Journal:  Mol Genet Genomics       Date:  2015-05-07       Impact factor: 3.291

5.  Benzylaminopurine application on two different apple cultivars (Malus domestica) displays new and unexpected fruitlet abscission features.

Authors:  Valeriano Dal Cin; Andrea Boschetti; Alberto Dorigoni; Angelo Ramina
Journal:  Ann Bot       Date:  2007-04-30       Impact factor: 4.357

6.  MdACO expression during abscission: the use of 33P labeled primers in transcript quantitation.

Authors:  Valeriano Dal Cin; Giulio Galla; Angelo Ramina
Journal:  Mol Biotechnol       Date:  2007-05       Impact factor: 2.860

7.  Dominance induction of fruitlet shedding in Malus x domestica (L. Borkh): molecular changes associated with polar auxin transport.

Authors:  Valeriano Dal Cin; Riccardo Velasco; Angelo Ramina
Journal:  BMC Plant Biol       Date:  2009-11-26       Impact factor: 4.215

8.  Cloning and characterization of the CarbcL gene related to chlorophyll in pepper (Capsicum annuum L.) under fruit shade stress.

Authors:  Shu-Bin Wang; Shi-Lin Tian; Syed N M Shah; Bao-Gui Pan; Wei-Ping Diao; Zhen-Hui Gong
Journal:  Front Plant Sci       Date:  2015-10-13       Impact factor: 5.753

9.  Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch).

Authors:  Marco Cirilli; Daniela Giovannini; Angelo Ciacciulli; Remo Chiozzotto; Stefano Gattolin; Laura Rossini; Alessandro Liverani; Daniele Bassi
Journal:  BMC Plant Biol       Date:  2018-05-18       Impact factor: 4.215

10.  Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes.

Authors:  Thomas L P Couvreur; Andrew J Helmstetter; Erik J M Koenen; Kevin Bethune; Rita D Brandão; Stefan A Little; Hervé Sauquet; Roy H J Erkens
Journal:  Front Plant Sci       Date:  2019-01-09       Impact factor: 5.753

  10 in total

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