Literature DB >> 22144070

An improved protocol for the isolation of RNA from roots of tea (Camellia sinensis (L.) O. Kuntze).

Richard Chalo Muoki1, Asosii Paul, Anita Kumari, Kashmir Singh, Sanjay Kumar.   

Abstract

Tea, a beverage crop, is a rich source of polyphenols and polysaccharides which greatly attribute to its importance. However, oxidation and precipitation of these compounds during nucleic acids extraction is a limitation to molecular biology and genomic studies. On isolation of total RNA from root tissue using established protocols, difficulties were encountered in terms of purity and quantity of isolated RNA or some of the methods were time-consuming and also yields were low. The present communication combines a phenol-based RNA isolation protocol with a cetyltrimethylammonium bromide-based procedure with appropriate modifications. This protocol successfully isolated RNA from tap root tissue in 2-3 h as compared with 16 h reported by the previous method. Also, RNA yield was higher by more than fourfold. The RNA isolated by this protocol was successfully used for downstream applications such as RT-PCR and the construction of suppression subtractive hybridization library. The developed protocol worked well with other plant tissue with high polyphenols and polysaccharides contents.

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Year:  2012        PMID: 22144070     DOI: 10.1007/s12033-011-9476-5

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  17 in total

Review 1.  POPP the question: what do LEA proteins do?

Authors:  Michael J Wise; Alan Tunnacliffe
Journal:  Trends Plant Sci       Date:  2004-01       Impact factor: 18.313

2.  26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reaction-based quantitative expression studies in diverse plant species.

Authors:  Kashmir Singh; Jyoti Raizada; Pradeep Bhardwaj; Sanjay Ghawana; Arti Rani; Harsharan Singh; Kiran Kaul; Sanjay Kumar
Journal:  Anal Biochem       Date:  2004-12-15       Impact factor: 3.365

3.  Differential display-mediated identification of three drought-responsive expressed sequence tags in tea [Camellia sinensis (L.) O. Kuntze].

Authors:  Priti Sharma; Sanjay Kumar
Journal:  J Biosci       Date:  2005-03       Impact factor: 1.826

4.  Responses to winter dormancy, temperature, and plant hormones share gene networks.

Authors:  Asosii Paul; Sanjay Kumar
Journal:  Funct Integr Genomics       Date:  2011-07-14       Impact factor: 3.410

5.  Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides.

Authors:  Reza Heidari Japelaghi; Raheem Haddad; Ghasem-Ali Garoosi
Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

6.  Alpha-tubulin (CsTUA) up-regulated during winter dormancy is a low temperature inducible gene in tea [Camellia sinensis (L.) O. Kuntze].

Authors:  Asosii Paul; Lakhvir Lal; Paramvir Singh Ahuja; Sanjay Kumar
Journal:  Mol Biol Rep       Date:  2011-07-03       Impact factor: 2.316

7.  Overcoming problems of phenolics and quinones in the isolation of plant enzymes and organelles.

Authors:  W D Loomis
Journal:  Methods Enzymol       Date:  1974       Impact factor: 1.600

Review 8.  Effects of tea consumption on nutrition and health.

Authors:  C S Yang; J M Landau
Journal:  J Nutr       Date:  2000-10       Impact factor: 4.798

9.  An early gene of the flavonoid pathway, flavanone 3-hydroxylase, exhibits a positive relationship with the concentration of catechins in tea (Camellia sinensis).

Authors:  Kashmir Singh; Arti Rani; Sanjay Kumar; Payal Sood; Monika Mahajan; Sudesh K Yadav; Bikram Singh; Paramvir S Ahuja
Journal:  Tree Physiol       Date:  2008-09       Impact factor: 4.196

10.  An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development.

Authors:  Karen E Reid; Niclas Olsson; James Schlosser; Fred Peng; Steven T Lund
Journal:  BMC Plant Biol       Date:  2006-11-14       Impact factor: 4.215

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  21 in total

1.  A shared response of thaumatin like protein, chitinase, and late embryogenesis abundant protein3 to environmental stresses in tea [Camellia sinensis (L.) O. Kuntze].

Authors:  Richard Chalo Muoki; Asosii Paul; Sanjay Kumar
Journal:  Funct Integr Genomics       Date:  2012-04-29       Impact factor: 3.410

2.  Dehydrin2 is a stress-inducible, whereas Dehydrin1 is constitutively expressed but up-regulated gene under varied cues in tea [Camellia sinensis (L.) O. Kuntze].

Authors:  Asosii Paul; Sanjay Kumar
Journal:  Mol Biol Rep       Date:  2012-12-30       Impact factor: 2.316

3.  A stress-responsive late embryogenesis abundant protein 7 (CsLEA7) of tea [Camellia sinensis (L.) O. Kuntze] encodes for a chaperone that imparts tolerance to Escherichia coli against stresses.

Authors:  Asosii Paul; Sewa Singh; Shweta Sharma; Sanjay Kumar
Journal:  Mol Biol Rep       Date:  2014-07-23       Impact factor: 2.316

4.  Poplar MYB115 and MYB134 Transcription Factors Regulate Proanthocyanidin Synthesis and Structure.

Authors:  Amy Midori James; Dawei Ma; Robin Mellway; Andreas Gesell; Kazuko Yoshida; Vincent Walker; Lan Tran; Don Stewart; Michael Reichelt; Jussi Suvanto; Juha-Pekka Salminen; Jonathan Gershenzon; Armand Séguin; C Peter Constabel
Journal:  Plant Physiol       Date:  2017-03-27       Impact factor: 8.340

5.  The MYB182 protein down-regulates proanthocyanidin and anthocyanin biosynthesis in poplar by repressing both structural and regulatory flavonoid genes.

Authors:  Kazuko Yoshida; Dawei Ma; C Peter Constabel
Journal:  Plant Physiol       Date:  2015-01-26       Impact factor: 8.340

6.  Genetic modification of Gossypium arboreum universal stress protein (GUSP1) improves drought tolerance in transgenic cotton (Gossypium hirsutum).

Authors:  Sameera Hassan; Aftab Ahmad; Fatima Batool; Bushra Rashid; Tayyab Husnain
Journal:  Physiol Mol Biol Plants       Date:  2021-08-23

7.  High-quality RNA isolation from pigment-rich Dendrobium flowers.

Authors:  Muhammad-Asyraf Khairul-Anuar; Purabi Mazumdar; Su-Ee Lau; Tian Tian Tan; Jennifer Ann Harikrishna
Journal:  3 Biotech       Date:  2019-09-25       Impact factor: 2.406

8.  Novel insights into expansion and functional diversification of MIR169 family in tomato.

Authors:  Sombir Rao; Sonia Balyan; Sarita Jha; Saloni Mathur
Journal:  Planta       Date:  2020-01-24       Impact factor: 4.116

9.  The Wheat NAC Transcription Factor TaNAC2L Is Regulated at the Transcriptional and Post-Translational Levels and Promotes Heat Stress Tolerance in Transgenic Arabidopsis.

Authors:  Weiwei Guo; Jinxia Zhang; Ning Zhang; Mingming Xin; Huiru Peng; Zhaorong Hu; Zhongfu Ni; Jinkun Du
Journal:  PLoS One       Date:  2015-08-25       Impact factor: 3.240

10.  RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters.

Authors:  Asosii Paul; Ashwani Jha; Shruti Bhardwaj; Sewa Singh; Ravi Shankar; Sanjay Kumar
Journal:  Sci Rep       Date:  2014-08-04       Impact factor: 4.379

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