Literature DB >> 20513389

Interplay between intrinsic noise and the stochasticity of the cell cycle in bacterial colonies.

Oriol Canela-Xandri1, Francesc Sagués, Javier Buceta.   

Abstract

Herein we report on the effects that different stochastic contributions induce in bacterial colonies in terms of protein concentration and production. In particular, we consider for what we believe to be the first time cell-to-cell diversity due to the unavoidable randomness of the cell-cycle duration and its interplay with other noise sources. To that end, we model a recent experimental setup that implements a protein dilution protocol by means of division events to characterize the gene regulatory function at the single cell level. This approach allows us to investigate the effect of different stochastic terms upon the total randomness experimentally reported for the gene regulatory function. In addition, we show that the interplay between intrinsic fluctuations and the stochasticity of the cell-cycle duration leads to different constructive roles. On the one hand, we show that there is an optimal value of protein concentration (alternatively an optimal value of the cell cycle phase) such that the noise in protein concentration attains a minimum. On the other hand, we reveal that there is an optimal value of the stochasticity of the cell cycle duration such that the coherence of the protein production with respect to the colony average production is maximized. The latter can be considered as a novel example of the recently reported phenomenon of diversity induced resonance. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20513389      PMCID: PMC2877355          DOI: 10.1016/j.bpj.2010.02.045

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

Review 2.  FtsZ and the division of prokaryotic cells and organelles.

Authors:  William Margolin
Journal:  Nat Rev Mol Cell Biol       Date:  2005-11       Impact factor: 94.444

3.  Molecular communication through stochastic synchronization induced by extracellular fluctuations.

Authors:  Tianshou Zhou; Luonan Chen; Kazuyuki Aihara
Journal:  Phys Rev Lett       Date:  2005-10-19       Impact factor: 9.161

4.  Diversity-induced resonance.

Authors:  Claudio J Tessone; Claudio R Mirasso; Raúl Toral; James D Gunton
Journal:  Phys Rev Lett       Date:  2006-11-06       Impact factor: 9.161

5.  A pathway and genetic factors contributing to elevated gene expression noise in stationary phase.

Authors:  Nicholas J Guido; Philina Lee; Xiao Wang; Timothy C Elston; J J Collins
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

6.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

7.  Exploring the roles of noise in the eukaryotic cell cycle.

Authors:  Sandip Kar; William T Baumann; Mark R Paul; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

Review 8.  Synchronization of chromosome dynamics and cell division in bacteria.

Authors:  Martin Thanbichler
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-01       Impact factor: 10.005

9.  Do cells cycle?

Authors:  J A Smith; L Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

10.  Quantitative model for gene regulation by lambda phage repressor.

Authors:  G K Ackers; A D Johnson; M A Shea
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

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  4 in total

1.  Contributions of cell growth and biochemical reactions to nongenetic variability of cells.

Authors:  Anne Schwabe; Frank J Bruggeman
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

2.  The cellular Ising model: a framework for phase transitions in multicellular environments.

Authors:  Marc Weber; Javier Buceta
Journal:  J R Soc Interface       Date:  2016-06       Impact factor: 4.118

3.  Noise regulation by quorum sensing in low mRNA copy number systems.

Authors:  Marc Weber; Javier Buceta
Journal:  BMC Syst Biol       Date:  2011-01-20

4.  Dynamics of the quorum sensing switch: stochastic and non-stationary effects.

Authors:  Marc Weber; Javier Buceta
Journal:  BMC Syst Biol       Date:  2013-01-16
  4 in total

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