Literature DB >> 14746990

Genomic microarrays in the spotlight.

Kiran K Mantripragada1, Patrick G Buckley, Teresita Diaz de Ståhl, Jan P Dumanski.   

Abstract

Microarray-based comparative genomic hybridization (array-CGH) has emerged as a revolutionary platform, enabling the high-resolution detection of DNA copy number aberrations. In this article we outline the use and limitations of genomic clones, cDNA clones and PCR products as targets for genomic microarray construction. Furthermore, the applications and future aspects of these arrays for DNA copy number analysis in research and diagnostics, epigenetic profiling and gene annotation are discussed. These recent developments of genomic microarrays mark only the beginning of a new generation of high-resolution and high-throughput tools for genetic analysis.

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Year:  2004        PMID: 14746990     DOI: 10.1016/j.tig.2003.12.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  42 in total

Review 1.  Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Authors:  Thomas E Royce; Joel S Rozowsky; Paul Bertone; Manoj Samanta; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark Gerstein
Journal:  Trends Genet       Date:  2005-08       Impact factor: 11.639

Review 2.  Multidimensional protein identification technology (MudPIT): technical overview of a profiling method optimized for the comprehensive proteomic investigation of normal and diseased heart tissue.

Authors:  Thomas Kislinger; Anthony O Gramolini; David H MacLennan; Andrew Emili
Journal:  J Am Soc Mass Spectrom       Date:  2005-08       Impact factor: 3.109

Review 3.  Advances in the molecular genetics of acute leukemia.

Authors:  Joseph M Scandura
Journal:  Curr Oncol Rep       Date:  2005-09       Impact factor: 5.075

4.  The impact of genomic alterations on the transcriptome: a prostate cancer cell line case study.

Authors:  J Chaudhary; M Schmidt
Journal:  Chromosome Res       Date:  2006-07-12       Impact factor: 5.239

Review 5.  Bioinformatics and cancer: an essential alliance.

Authors:  Joaquín Dopazo
Journal:  Clin Transl Oncol       Date:  2006-06       Impact factor: 3.405

Review 6.  Diagnostic genome profiling: unbiased whole genome or targeted analysis?

Authors:  Joris A Veltman; Bert B A de Vries
Journal:  J Mol Diagn       Date:  2006-11       Impact factor: 5.568

7.  High-resolution genomic arrays facilitate detection of novel cryptic chromosomal lesions in myelodysplastic syndromes.

Authors:  Christine L O'Keefe; Ramon Tiu; Lukasz P Gondek; Jennifer Powers; Karl S Theil; Matt Kalaycio; Alan Lichtin; Mikkael A Sekeres; Jaroslaw P Maciejewski
Journal:  Exp Hematol       Date:  2007-02       Impact factor: 3.084

Review 8.  Whole genome scanning as a cytogenetic tool in hematologic malignancies.

Authors:  Jaroslaw P Maciejewski; Ghulam J Mufti
Journal:  Blood       Date:  2008-05-27       Impact factor: 22.113

9.  Exon array CGH: detection of copy-number changes at the resolution of individual exons in the human genome.

Authors:  Pawandeep Dhami; Alison J Coffey; Stephen Abbs; Joris R Vermeesch; Jan P Dumanski; Karen J Woodward; Robert M Andrews; Cordelia Langford; David Vetrie
Journal:  Am J Hum Genet       Date:  2005-03-08       Impact factor: 11.025

10.  High-resolution array-CGH profiling of germline and tumor-specific copy number alterations on chromosome 22 in patients affected with schwannomas.

Authors:  Teresita Díaz de Ståhl; Caisa M Hansson; Cecilia de Bustos; Kiran K Mantripragada; Arkadiusz Piotrowski; Magdalena Benetkiewicz; Caroline Jarbo; Leif Wiklund; Tiit Mathiesen; Gunnar Nyberg; V Peter Collins; D Gareth Evans; Koichi Ichimura; Jan P Dumanski
Journal:  Hum Genet       Date:  2005-10-28       Impact factor: 4.132

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