Literature DB >> 14733570

Quantitative analysis of conformational exchange contributions to 1H-15N multiple-quantum relaxation using field-dependent measurements. Time scale and structural characterization of exchange in a calmodulin C-terminal domain mutant.

Patrik Lundström1, Mikael Akke.   

Abstract

Multiple-quantum spin relaxation is a sensitive probe for correlated conformational exchange dynamics on microsecond to millisecond time scales in biomolecules. We measured differential 1H-15N multiple-quantum relaxation rates for the backbone amide groups of the E140Q mutant of the C-terminal domain of calmodulin at three static magnetic field strengths. The differential multiple-quantum relaxation rates range between -88.7 and 92.7 s(-1), and the mean and standard deviation are 7.0 +/- 24 s(-1), at a static magnetic field strength of 14.1 T. Together with values of the 1H and 15N chemical shift anisotropies (CSA) determined separately, the field-dependent data enable separation of the different contributions from dipolar-dipolar, CSA-CSA, and conformational exchange cross-correlated relaxation mechanisms to the differential multiple-quantum relaxation rates. The procedure yields precise quantitative information on the dominant conformational exchange contributions observed in this protein. The field-dependent differences between double- and zero-quantum relaxation rates directly benchmark the rates of conformational exchange, showing that these are fast on the chemical shift time scale for the large majority of residues in the protein. Further analysis of the differential 1H-15N multiple-quantum relaxation rates using previously determined exchange rate constants and populations, obtained from 15N off-resonance rotating-frame relaxation data, enables extraction of the product of the chemical shift differences between the resonance frequencies of the 1H and 15N spins in the exchanging conformations, deltasigma(H)deltasigma(N). Thus, information on the 1H chemical shift differences is obtained, while circumventing complications associated with direct measurements of conformational exchange effects on 1H single-quantum coherences in nondeuterated proteins. The method significantly increases the information content available for structural interpretation of the conformational exchange process, partly because deltasigma(H)deltasigma(N) is a signed quantity, and partly because two chemical shifts are probed simultaneously. The present results support the hypothesis that the exchange in the calcium-loaded state of the E140Q mutant involves conformations similar to those of the wild-type apo (closed) and calcium-loaded (open) states.

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Year:  2004        PMID: 14733570     DOI: 10.1021/ja037529r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Observation of microsecond time-scale protein dynamics in the presence of Ln3+ ions: application to the N-terminal domain of cardiac troponin C.

Authors:  Christian Eichmüller; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2006-12-19       Impact factor: 2.835

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins.

Authors:  Patrik Lundström; Frans A A Mulder; Mikael Akke
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-08       Impact factor: 11.205

4.  Correlated motions of C'-N and Cα-Cβ pairs in protonated and per-deuterated GB3.

Authors:  Liliya Vugmeyster; Aaron Griffin; Dmitry Ostrovsky; Shibani Bhattacharya; Parker J Nichols; C James McKnight; Beat Vögeli
Journal:  J Biomol NMR       Date:  2018-08-18       Impact factor: 2.835

5.  Off-resonance rotating-frame amide proton spin relaxation experiments measuring microsecond chemical exchange in proteins.

Authors:  Patrik Lundström; Mikael Akke
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

6.  Calmodulin binds to extracellular sites on the plasma membrane of plant cells and elicits a rise in intracellular calcium concentration.

Authors:  Qinli Wang; Bo Chen; Peng Liu; Maozhong Zheng; Yuqing Wang; Sujuan Cui; Daye Sun; Xiaohong Fang; Chun-Ming Liu; William J Lucas; Jinxing Lin
Journal:  J Biol Chem       Date:  2009-03-02       Impact factor: 5.157

Review 7.  Distance-independent Cross-correlated Relaxation and Isotropic Chemical Shift Modulation in Protein Dynamics Studies.

Authors:  Beat Vögeli; Liliya Vugmeyster
Journal:  Chemphyschem       Date:  2018-09-03       Impact factor: 3.520

8.  Dynamic regulation of GDP binding to G proteins revealed by magnetic field-dependent NMR relaxation analyses.

Authors:  Yuki Toyama; Hanaho Kano; Yoko Mase; Mariko Yokogawa; Masanori Osawa; Ichio Shimada
Journal:  Nat Commun       Date:  2017-02-22       Impact factor: 14.919

9.  Conformational heterogeneity of the calmodulin binding interface.

Authors:  Diwakar Shukla; Ariana Peck; Vijay S Pande
Journal:  Nat Commun       Date:  2016-04-04       Impact factor: 14.919

  9 in total

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