Literature DB >> 14701882

What determines whether mammalian ribosomes resume scanning after translation of a short upstream open reading frame?

Tuija A A Pöyry1, Ann Kaminski, Richard J Jackson.   

Abstract

If the 5'-proximal AUG triplet in a mammalian mRNA is followed by a short open reading frame (sORF), a significant fraction of ribosomes resume scanning after termination of sORF translation, and reinitiate at a downstream AUG. To examine the underlying mechanism, we examined reinitiation in vitro using a series of mRNAs that differed only in the 5'-untranslated region (UTR). Efficient reinitiation was found to occur only if the eIF4F complex, or at a minimum the central one-third fragment of eIF4G, participated in the primary initiation event at the sORF initiation codon. It did not occur, however, when sORF translation was driven by the classical swine fever virus or cricket paralysis virus internal ribosome entry sites (IRESs), which do not use eIF4A, 4B, 4E, or 4G. A critical test was provided by an mRNA with an unstructured 5'-UTR, which is translated by scanning but does not absolutely need eIF4G and eIF4A: There was efficient reinitiation in a standard reticulocyte lysate, when initiation would be largely driven by eIF4F, but no reinitiation in an eIF4G-depleted lysate. These results suggest that resumption of scanning may depend on the interaction between eIF4F (or the eIF4G central domain) and the ribosome being maintained while the ribosome translates the sORF.

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Year:  2003        PMID: 14701882      PMCID: PMC314277          DOI: 10.1101/gad.276504

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  44 in total

1.  Initiation of translation of human rhinovirus RNA: mapping the internal ribosome entry site.

Authors:  A Borman; R J Jackson
Journal:  Virology       Date:  1992-06       Impact factor: 3.616

2.  A short leader sequence impairs the fidelity of initiation by eukaryotic ribosomes.

Authors:  M Kozak
Journal:  Gene Expr       Date:  1991-05

Review 3.  An analysis of vertebrate mRNA sequences: intimations of translational control.

Authors:  M Kozak
Journal:  J Cell Biol       Date:  1991-11       Impact factor: 10.539

4.  An unusual coordinated cleavage event in the processing of encephalomyocarditis virus polypeptides.

Authors:  R J Jackson
Journal:  Virology       Date:  1989-09       Impact factor: 3.616

5.  Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus.

Authors:  Eric Jan; Peter Sarnow
Journal:  J Mol Biol       Date:  2002-12-13       Impact factor: 5.469

6.  The specificities of yeast methionine aminopeptidase and acetylation of amino-terminal methionine in vivo. Processing of altered iso-1-cytochromes c created by oligonucleotide transformation.

Authors:  R P Moerschell; Y Hosokawa; S Tsunasawa; F Sherman
Journal:  J Biol Chem       Date:  1990-11-15       Impact factor: 5.157

7.  Initiation of encephalomyocarditis virus RNA translation: the authentic initiation site is not selected by a scanning mechanism.

Authors:  A Kaminski; M T Howell; R J Jackson
Journal:  EMBO J       Date:  1990-11       Impact factor: 11.598

8.  Ribosomal pausing during translation of an RNA pseudoknot.

Authors:  P Somogyi; A J Jenner; I Brierley; S C Inglis
Journal:  Mol Cell Biol       Date:  1993-11       Impact factor: 4.272

9.  Positions +5 and +6 can be major determinants of the efficiency of non-AUG initiation codons for protein synthesis.

Authors:  R Boeck; D Kolakofsky
Journal:  EMBO J       Date:  1994-08-01       Impact factor: 11.598

10.  Dominant negative mutants of mammalian translation initiation factor eIF-4A define a critical role for eIF-4F in cap-dependent and cap-independent initiation of translation.

Authors:  A Pause; N Méthot; Y Svitkin; W C Merrick; N Sonenberg
Journal:  EMBO J       Date:  1994-03-01       Impact factor: 11.598

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  94 in total

1.  Differential effects of nucleotide analogs on scanning-dependent initiation and elongation of mammalian mRNA translation in vitro.

Authors:  Julie L Aspden; Richard J Jackson
Journal:  RNA       Date:  2010-04-27       Impact factor: 4.942

2.  The eukaryotic initiation factor (eIF) 4G HEAT domain promotes translation re-initiation in yeast both dependent on and independent of eIF4A mRNA helicase.

Authors:  Ryosuke Watanabe; Marcelo Jun Murai; Chingakham Ranjit Singh; Stephanie Fox; Miki Ii; Katsura Asano
Journal:  J Biol Chem       Date:  2010-05-12       Impact factor: 5.157

3.  Multiple elements in the eIF4G1 N-terminus promote assembly of eIF4G1•PABP mRNPs in vivo.

Authors:  Eun-Hee Park; Sarah E Walker; Joseph M Lee; Stefan Rothenburg; Jon R Lorsch; Alan G Hinnebusch
Journal:  EMBO J       Date:  2010-12-07       Impact factor: 11.598

4.  The 5'-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway.

Authors:  Sarah F Mitchell; Sarah E Walker; Mikkel A Algire; Eun-Hee Park; Alan G Hinnebusch; Jon R Lorsch
Journal:  Mol Cell       Date:  2010-09-24       Impact factor: 17.970

5.  The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames.

Authors:  Bijoyita Roy; Justin N Vaughn; Byung-Hoon Kim; Fujun Zhou; Michael A Gilchrist; Albrecht G Von Arnim
Journal:  RNA       Date:  2010-02-23       Impact factor: 4.942

6.  MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function.

Authors:  David T Humphreys; Belinda J Westman; David I K Martin; Thomas Preiss
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-15       Impact factor: 11.205

7.  Expression of human Hemojuvelin (HJV) is tightly regulated by two upstream open reading frames in HJV mRNA that respond to iron overload in hepatic cells.

Authors:  Cláudia Onofre; Filipa Tomé; Cristina Barbosa; Ana Luísa Silva; Luísa Romão
Journal:  Mol Cell Biol       Date:  2015-02-09       Impact factor: 4.272

8.  The mechanism of an exceptional case of reinitiation after translation of a long ORF reveals why such events do not generally occur in mammalian mRNA translation.

Authors:  Tuija A A Pöyry; Ann Kaminski; Emma J Connell; Christopher S Fraser; Richard J Jackson
Journal:  Genes Dev       Date:  2007-12-01       Impact factor: 11.361

Review 9.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

10.  The canonical UPF1-dependent nonsense-mediated mRNA decay is inhibited in transcripts carrying a short open reading frame independent of sequence context.

Authors:  Ana Luísa Silva; Francisco J C Pereira; Ana Morgado; Jian Kong; Rute Martins; Paula Faustino; Stephen A Liebhaber; Luísa Romão
Journal:  RNA       Date:  2006-10-31       Impact factor: 4.942

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