Literature DB >> 11125062

The ARKdb: genome databases for farmed and other animals.

J Hu1, C Mungall, A Law, R Papworth, J P Nelson, A Brown, I Simpson, S Leckie, D W Burt, A L Hillyard, A L Archibald.   

Abstract

The ARKdb genome databases provide comprehensive public repositories for genome mapping data from farmed species and other animals (http://www.thearkdb.org) providing a resource similar in function to that offered by GDB or MGD for human or mouse genome mapping data, respectively. Because we have attempted to build a generic mapping database, the system has wide utility, particularly for those species for which development of a specific resource would be prohibitive. The ARKdb genome database model has been implemented for 10 species to date. These are pig, chicken, sheep, cattle, horse, deer, tilapia, cat, turkey and salmon. Access to the ARKdb databases is effected via the World Wide Web using the ARKdb browser and Anubis map viewer. The information stored includes details of loci, maps, experimental methods and the source references. Links to other information sources such as PubMed and EMBL/GenBank are provided. Responsibility for data entry and curation is shared amongst scientists active in genome research in the species of interest. Mirror sites in the United States are maintained in addition to the central genome server at Roslin.

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Year:  2001        PMID: 11125062      PMCID: PMC29807          DOI: 10.1093/nar/29.1.106

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  3 in total

1.  The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group.

Authors:  J A Blake; J T Eppig; J E Richardson; M T Davisson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The sheep gene map database (SheepBase) is now available on the World Wide Web.

Authors:  J A Sise; A L Hillyard; G W Montgomery
Journal:  Mamm Genome       Date:  1996-01       Impact factor: 2.957

3.  GDB: the Human Genome Database.

Authors:  S I Letovsky; R W Cottingham; C J Porter; P W Li
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

  3 in total
  18 in total

1.  Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases.

Authors:  Charles Brenner
Journal:  Biochemistry       Date:  2002-07-23       Impact factor: 3.162

2.  A comparative radiation hybrid map of bovine chromosome 18 and homologous chromosomes in human and mice.

Authors:  Tom Goldammer; Srinivas R Kata; Ronald M Brunner; Ute Dorroch; Hanka Sanftleben; Manfred Schwerin; James E Womack
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

3.  A QTL resource and comparison tool for pigs: PigQTLDB.

Authors:  Zhi-Liang Hu; Svetlana Dracheva; Wonhee Jang; Donna Maglott; John Bastiaansen; Max F Rothschild; James M Reecy
Journal:  Mamm Genome       Date:  2005-10-29       Impact factor: 2.957

4.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  Biomarker discovery in animal health and disease: the application of post-genomic technologies.

Authors:  Rowan E Moore; Jennifer Kirwan; Mary K Doherty; Phillip D Whitfield
Journal:  Biomark Insights       Date:  2007-07-10

6.  A MOD(ern) perspective on literature curation.

Authors:  Jodi Hirschman; Tanya Z Berardini; Harold J Drabkin; Doug Howe
Journal:  Mol Genet Genomics       Date:  2010-03-11       Impact factor: 3.291

7.  Comparative Approach of the de novo Fatty Acid Synthesis (Lipogenesis) between Ruminant and Non Ruminant Mammalian Species: From Biochemical Level to the Main Regulatory Lipogenic Genes.

Authors:  G P Laliotis; I Bizelis; E Rogdakis
Journal:  Curr Genomics       Date:  2010-05       Impact factor: 2.236

8.  The Pig Genome Database (PiGenome): an integrated database for pig genome research.

Authors:  Dajeong Lim; Yong-Min Cho; Kyung-Tai Lee; Yeonkyung Kang; Samsun Sung; Jungrye Nam; Eung-Woo Park; Sung-Jong Oh; Seok-Ki Im; Heebal Kim
Journal:  Mamm Genome       Date:  2008-12-10       Impact factor: 2.957

9.  Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals.

Authors:  Frank W Nicholas
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 10.  Farm animal genomics and informatics: an update.

Authors:  Ahmed Fadiel; Ifeanyi Anidi; Kenneth D Eichenbaum
Journal:  Nucleic Acids Res       Date:  2005-11-07       Impact factor: 16.971

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