Literature DB >> 21044762

Understanding kidney disease: toward the integration of regulatory networks across species.

Wenjun Ju1, Frank C Brosius.   

Abstract

Animal models have long been useful in investigating both normal and abnormal human physiology. Systems biology provides a relatively new set of approaches to identify similarities and differences between animal models and human beings that may lead to a more comprehensive understanding of human kidney pathophysiology. In this review, we briefly describe how genome-wide analyses of mouse models have helped elucidate features of human kidney diseases, discuss strategies to achieve effective network integration, and summarize currently available web-based tools that may facilitate integration of data across species. The rapid progress in systems biology and orthology, as well as the advent of web-based tools to facilitate these processes, now make it possible to take advantage of knowledge from distant animal species in targeted identification of regulatory networks that may have clinical relevance for human kidney diseases. 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21044762      PMCID: PMC2989742          DOI: 10.1016/j.semnephrol.2010.07.008

Source DB:  PubMed          Journal:  Semin Nephrol        ISSN: 0270-9295            Impact factor:   5.299


  49 in total

1.  Gene expression in the normal adult human kidney assessed by complementary DNA microarray.

Authors:  John P T Higgins; Lingli Wang; Neeraja Kambham; Kelli Montgomery; Veronica Mason; Stefanie U Vogelmann; Kevin V Lemley; Patrick O Brown; James D Brooks; Matt van de Rijn
Journal:  Mol Biol Cell       Date:  2003-12-02       Impact factor: 4.138

2.  A panoramic view of gene expression in the human kidney.

Authors:  Danielle Chabardès-Garonne; Arnaud Mejéan; Jean-Christophe Aude; Lydie Cheval; Antonio Di Stefano; Marie-Claude Gaillard; Martine Imbert-Teboul; Monika Wittner; Chanth Balian; Véronique Anthouard; Catherine Robert; Beatrice Ségurens; Patrick Wincker; Jean Weissenbach; Alain Doucet; Jean-Marc Elalouf
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

3.  Gene expression analysis in renal biopsies.

Authors:  Holger Schmid; Clemens D Cohen; Anna Henger; Detlef Schlöndorff; Matthias Kretzler
Journal:  Nephrol Dial Transplant       Date:  2004-03-19       Impact factor: 5.992

4.  Characterization of susceptibility of inbred mouse strains to diabetic nephropathy.

Authors:  Zhonghua Qi; Hiroki Fujita; Jianping Jin; Linda S Davis; Yihan Wang; Agnes B Fogo; Matthew D Breyer
Journal:  Diabetes       Date:  2005-09       Impact factor: 9.461

5.  Gene expression profiling of anti-GBM glomerulonephritis model: the role of NF-kappaB in immune complex kidney disease.

Authors:  Ju Han Kim; Il Soo Ha; Chang-Il Hwang; Young-Ju Lee; Jihoon Kim; Seung-Hee Yang; Yon Su Kim; Yun Anna Cao; Sangdun Choi; Woong-Yang Park
Journal:  Kidney Int       Date:  2004-11       Impact factor: 10.612

6.  The mouse Gene Expression Database (GXD): updates and enhancements.

Authors:  David P Hill; Dale A Begley; Jacqueline H Finger; Terry F Hayamizu; Ingeborg J McCright; Constance M Smith; Jon S Beal; Lori E Corbani; Judith A Blake; Janan T Eppig; James A Kadin; Joel E Richardson; Martin Ringwald
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 7.  Gene expression analysis of human renal biopsies: recent developments towards molecular diagnosis of kidney disease.

Authors:  Anna Henger; Holger Schmid; Matthias Kretzler
Journal:  Curr Opin Nephrol Hypertens       Date:  2004-05       Impact factor: 2.894

8.  GXD: a gene expression database for the laboratory mouse. The Gene Expression Database Group.

Authors:  M Ringwald; M E Mangan; J T Eppig; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

9.  Molecular profiling of diabetic mouse kidney reveals novel genes linked to glomerular disease.

Authors:  Katalin Susztak; Erwin Böttinger; Akiva Novetsky; Dan Liang; Yanqing Zhu; Emilio Ciccone; Dona Wu; Stephen Dunn; Peter McCue; Kumar Sharma
Journal:  Diabetes       Date:  2004-03       Impact factor: 9.461

10.  Inparanoid: a comprehensive database of eukaryotic orthologs.

Authors:  Kevin P O'Brien; Maido Remm; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  2 in total

1.  Integrative biology of renal disease: toward a holistic understanding of the kidney's function and failure.

Authors:  Matthias Kretzler; Clemens D Cohen
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

2.  Design of the Nephrotic Syndrome Study Network (NEPTUNE) to evaluate primary glomerular nephropathy by a multidisciplinary approach.

Authors:  Crystal A Gadegbeku; Debbie S Gipson; Lawrence B Holzman; Akinlolu O Ojo; Peter X K Song; Laura Barisoni; Matthew G Sampson; Jeffrey B Kopp; Kevin V Lemley; Peter J Nelson; Chrysta C Lienczewski; Sharon G Adler; Gerald B Appel; Daniel C Cattran; Michael J Choi; Gabriel Contreras; Katherine M Dell; Fernando C Fervenza; Keisha L Gibson; Larry A Greenbaum; Joel D Hernandez; Stephen M Hewitt; Sangeeta R Hingorani; Michelle Hladunewich; Marie C Hogan; Susan L Hogan; Frederick J Kaskel; John C Lieske; Kevin E C Meyers; Patrick H Nachman; Cynthia C Nast; Alicia M Neu; Heather N Reich; John R Sedor; Christine B Sethna; Howard Trachtman; Katherine R Tuttle; Olga Zhdanova; Gastòn E Zilleruelo; Matthias Kretzler
Journal:  Kidney Int       Date:  2013-01-16       Impact factor: 10.612

  2 in total

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