Literature DB >> 14645537

Affinity purification of specific chromatin segments from chromosomal loci in yeast.

Joachim Griesenbeck1, Hinrich Boeger, J Seth Strattan, Roger D Kornberg.   

Abstract

Single-copy gene and promoter regions have been excised from yeast chromosomes and have been purified as chromatin by conventional and affinity methods. Promoter regions isolated in transcriptionally repressed and activated states maintain their characteristic chromatin structures. Gel filtration analysis establishes the uniformity of the transcriptionally activated state. Activator proteins interact in the manner anticipated from previous studies in vivo. This work opens the way to the direct study of specific gene regions of eukaryotic chromosomes in diverse functional and structural states.

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Year:  2003        PMID: 14645537      PMCID: PMC309680          DOI: 10.1128/MCB.23.24.9275-9282.2003

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  16 in total

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Authors:  F A Steinböck; G Wiche
Journal:  Biol Chem       Date:  1999-02       Impact factor: 3.915

2.  An in vitro system recapitulates chromatin remodeling at the PHO5 promoter.

Authors:  E S Haswell; E K O'Shea
Journal:  Mol Cell Biol       Date:  1999-04       Impact factor: 4.272

3.  Disruption of reconstituted nucleosomes. The effect of particle concentration, MgCl2 and KCl concentration, the histone tails, and temperature.

Authors:  J S Godde; A P Wolffe
Journal:  J Biol Chem       Date:  1995-11-17       Impact factor: 5.157

Review 4.  Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast.

Authors:  J Svaren; W Hörz
Journal:  Trends Biochem Sci       Date:  1997-03       Impact factor: 13.807

Review 5.  Signaling phosphate starvation.

Authors:  M E Lenburg; E K O'Shea
Journal:  Trends Biochem Sci       Date:  1996-10       Impact factor: 13.807

6.  The Swi5 zinc-finger and Grf10 homeodomain proteins bind DNA cooperatively at the yeast HO promoter.

Authors:  R M Brazas; D J Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-01       Impact factor: 11.205

7.  Specific initiation by RNA polymerase I in a whole-cell extract from yeast.

Authors:  M C Schultz; S Y Choe; R H Reeder
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-01       Impact factor: 11.205

8.  Isolation of selected chromatin fragments from yeast by site-specific recombination in vivo.

Authors:  A Ansari; T H Cheng; M R Gartenberg
Journal:  Methods       Date:  1999-02       Impact factor: 3.608

9.  A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter.

Authors:  U Venter; J Svaren; J Schmitz; A Schmid; W Hörz
Journal:  EMBO J       Date:  1994-10-17       Impact factor: 11.598

10.  Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

Authors:  A Almer; H Rudolph; A Hinnen; W Hörz
Journal:  EMBO J       Date:  1986-10       Impact factor: 11.598

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  29 in total

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Authors:  Ryan J Austin; Heidi M Smidansky; Carly A Holstein; Deborah K Chang; Angela Epp; Neil C Josephson; Daniel B Martin
Journal:  Proteomics       Date:  2011-12-12       Impact factor: 3.984

2.  In vivo role for the chromatin-remodeling enzyme SWI/SNF in the removal of promoter nucleosomes by disassembly rather than sliding.

Authors:  Christopher R Brown; Changhui Mao; Elena Falkovskaia; Jason K Law; Hinrich Boeger
Journal:  J Biol Chem       Date:  2011-10-06       Impact factor: 5.157

3.  Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription.

Authors:  Hinrich Boeger; Joachim Griesenbeck; Roger D Kornberg
Journal:  Cell       Date:  2008-05-16       Impact factor: 41.582

4.  Nucleosomal promoter variation generates gene expression noise.

Authors:  Christopher R Brown; Hinrich Boeger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

5.  Chromatin potentiates transcription.

Authors:  Shigeki Nagai; Ralph E Davis; Pierre Jean Mattei; Kyle Patrick Eagen; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

6.  A CRISPR-based approach for proteomic analysis of a single genomic locus.

Authors:  Zachary J Waldrip; Stephanie D Byrum; Aaron J Storey; Jun Gao; Alicia K Byrd; Samuel G Mackintosh; Wayne P Wahls; Sean D Taverna; Kevin D Raney; Alan J Tackett
Journal:  Epigenetics       Date:  2014-07-18       Impact factor: 4.528

Review 7.  Purification and enrichment of specific chromatin loci.

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Journal:  Nat Methods       Date:  2020-03-09       Impact factor: 28.547

8.  dCas9-targeted locus-specific protein isolation method identifies histone gene regulators.

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

9.  Nucleosomal proofreading of activator-promoter interactions.

Authors:  Robert Shelansky; Hinrich Boeger
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

10.  ChAP-MS: a method for identification of proteins and histone posttranslational modifications at a single genomic locus.

Authors:  Stephanie D Byrum; Ana Raman; Sean D Taverna; Alan J Tackett
Journal:  Cell Rep       Date:  2012-07-20       Impact factor: 9.423

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