Literature DB >> 14634728

Synteny between a major heading-date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading-date locus in rice.

I P Armstead1, L B Turner, M Farrell, L Skøt, P Gomez, T Montoya, I S Donnison, I P King, M O Humphreys.   

Abstract

The genetic control of induction to flowering has been studied extensively in both model and crop species because of its fundamental biological and economic significance. An ultimate aim of many of these studies has been the application of the understanding of control of flowering that can be gained from the study of model species, to the improvement of crop species. The present study identifies a region of genetic synteny between rice and Lolium perenne, which contains the Hd3 heading-date QTL in rice and a major QTL, accounting for up to 70% of the variance associated with heading date in L. perenne. The identification of synteny between rice and L. perenne in this region demonstrates the direct applicability of the rice genome to the understanding of biological processes in other species. Specifically, this syntenic relationship will greatly facilitate the genetic dissection of aspects of heading-date induction by enabling the magnitude of the genetic component of the heading-date QTL in L. perenne to be combined with the sequencing and annotation information from the rice genome.

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Year:  2003        PMID: 14634728     DOI: 10.1007/s00122-003-1495-6

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  20 in total

1.  Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.

Authors:  M Yano; Y Katayose; M Ashikari; U Yamanouchi; L Monna; T Fuse; T Baba; K Yamamoto; Y Umehara; Y Nagamura; T Sasaki
Journal:  Plant Cell       Date:  2000-12       Impact factor: 11.277

2.  Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice.

Authors:  L. Monna; X. Lin; S. Kojima; T. Sasaki; M. Yano
Journal:  Theor Appl Genet       Date:  2002-02-06       Impact factor: 5.699

3.  High density molecular linkage maps of the tomato and potato genomes.

Authors:  S D Tanksley; M W Ganal; J P Prince; M C de Vicente; M W Bonierbale; P Broun; T M Fulton; J J Giovannoni; S Grandillo; G B Martin
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

4.  Molecular genecology of temperature response in Lolium perenne: 2. association of AFLP markers with ecogeography.

Authors:  L Skøt; N R Sackville Hamilton; S Mizen; K H Chorlton; I D Thomas
Journal:  Mol Ecol       Date:  2002-09       Impact factor: 6.185

5.  Mapping of RFLP and qualitative trait loci in Brassica rapa and comparison to the linkage maps of B. napus, B. oleracea, and Arabidopsis thaliana.

Authors:  R A Teutonico; T C Osborn
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

6.  Genetic and physical analysis of a single Festuca pratensis chromosome segment substitution in Lolium perenne.

Authors:  I P Armstead; A Bollard; W G Morgan; J A Harper; I P King; R N Jones; J W Forster; M D Hayward; H M Thomas
Journal:  Chromosoma       Date:  2001-04       Impact factor: 4.316

7.  Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat ( Triticum aestivum L.).

Authors:  A. Börner; E. Schumann; A. Fürste; H. Cöster; B. Leithold; S. Röder; E. Weber
Journal:  Theor Appl Genet       Date:  2002-06-21       Impact factor: 5.699

8.  A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Authors:  Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

9.  RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross.

Authors:  D A Laurie; N Pratchett; J W Snape; J H Bezant
Journal:  Genome       Date:  1995-06       Impact factor: 2.166

10.  Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross.

Authors:  J Xiao; J Li; L Yuan; S D Tanksley
Journal:  Theor Appl Genet       Date:  1996-02       Impact factor: 5.699

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  33 in total

Review 1.  Contributions of domesticated plant studies to our understanding of plant evolution.

Authors:  James F Hancock
Journal:  Ann Bot       Date:  2005-09-13       Impact factor: 4.357

2.  Mapping of a spontaneous mutation for early flowering time in maize highlights contrasting allelic series at two-linked QTL on chromosome 8.

Authors:  Fabien Chardon; Delphine Hourcade; Valérie Combes; Alain Charcosset
Journal:  Theor Appl Genet       Date:  2005-10-22       Impact factor: 5.699

3.  Linkage map construction in allotetraploid creeping bentgrass (Agrostis stolonifera L.).

Authors:  N Chakraborty; J Bae; S Warnke; T Chang; G Jung
Journal:  Theor Appl Genet       Date:  2005-06-25       Impact factor: 5.699

4.  Quantitative trait loci controlling vernalisation requirement, heading time and number of panicles in meadow fescue (Festuca pratensis Huds.).

Authors:  A Ergon; C Fang; Ø Jørgensen; T S Aamlid; O A Rognli
Journal:  Theor Appl Genet       Date:  2005-10-19       Impact factor: 5.699

5.  QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals co-location with an orthologue of wheat VRN1.

Authors:  Louise Bach Jensen; Jeppe Reitan Andersen; Ursula Frei; Yongzhong Xing; Chris Taylor; Preben Bach Holm; Thomas Lübberstedt
Journal:  Theor Appl Genet       Date:  2004-12-24       Impact factor: 5.699

6.  Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization.

Authors:  John Harper; Ian Armstead; Ann Thomas; Caron James; Dagmara Gasior; Maciej Bisaga; Luned Roberts; Ian King; Julie King
Journal:  Ann Bot       Date:  2011-04-12       Impact factor: 4.357

7.  Phylogenomic analysis of the PEBP gene family in cereals.

Authors:  Fabien Chardon; Catherine Damerval
Journal:  J Mol Evol       Date:  2005-09-13       Impact factor: 2.395

8.  A genomic and expression compendium of the expanded PEBP gene family from maize.

Authors:  Olga N Danilevskaya; Xin Meng; Zhenglin Hou; Evgueni V Ananiev; Carl R Simmons
Journal:  Plant Physiol       Date:  2007-11-09       Impact factor: 8.340

9.  A perennial ryegrass CBF gene cluster is located in a region predicted by conserved synteny between Poaceae species.

Authors:  K Tamura; T Yamada
Journal:  Theor Appl Genet       Date:  2006-10-31       Impact factor: 5.699

10.  Development of a genomic microsatellite library in perennial ryegrass (Lolium perenne) and its use in trait mapping.

Authors:  J King; D Thorogood; K J Edwards; I P Armstead; L Roberts; K Skøt; Z Hanley; I P King
Journal:  Ann Bot       Date:  2008-02-15       Impact factor: 4.357

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