Literature DB >> 18281692

Development of a genomic microsatellite library in perennial ryegrass (Lolium perenne) and its use in trait mapping.

J King1, D Thorogood, K J Edwards, I P Armstead, L Roberts, K Skøt, Z Hanley, I P King.   

Abstract

BACKGROUND AND AIMS: Perennial ryegrass (Lolium perenne) is one of the key forage and amenity grasses throughout the world. In the UK it accounts for 70 % of all agricultural land use with an estimated farm gate value of 6 billion pounds per annum. However, in terms of the genetic resources available, L. perenne has lagged behind other major crops in Poaceae. The aim of this project was therefore the construction of a microsatellite-enriched genomic library for L. perenne to increase the number of genetic markers available for both marker-assisted selection in breeding programmes and gene isolation.
METHODS: Primers for 229 non-redundant microsatellite markers were designed and used to screen two L. perenne genotypes, one amenity and one forage. Of the 229 microsatellites, 95 were found to show polymorphism between amenity and forage genotypes. A selection of microsatellite primers was selected from these 95 and used to screen two mapping populations derived from intercrossing and backcrossing the two forage and amenity grass genotypes. KEY RESULTS AND
CONCLUSIONS: The utility of the resulting genetic maps for analysis of the genetic control of target traits was demonstrated by the mapping of genes associated with heading date to linkage groups 4 and 7.

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Year:  2008        PMID: 18281692      PMCID: PMC2710216          DOI: 10.1093/aob/mcn016

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  19 in total

1.  A simple sequence repeat-based linkage map of barley.

Authors:  L Ramsay; M Macaulay; S degli Ivanissevich; K MacLean; L Cardle; J Fuller; K J Edwards; S Tuvesson; M Morgante; A Massari; E Maestri; N Marmiroli; T Sjakste; M Ganal; W Powell; R Waugh
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  Dissecting the regulation of fructan metabolism in perennial ryegrass (Lolium perenne) with quantitative trait locus mapping.

Authors:  L B Turner; A J Cairns; I P Armstead; J Ashton; K Skøt; D Whittaker; M O Humphreys
Journal:  New Phytol       Date:  2006       Impact factor: 10.151

3.  From crop to model to crop: identifying the genetic basis of the staygreen mutation in the Lolium/Festuca forage and amenity grasses.

Authors:  Ian Armstead; Iain Donnison; Sylvain Aubry; John Harper; Stefan Hörtensteiner; Caron James; Jan Mani; Matt Moffet; Helen Ougham; Luned Roberts; Ann Thomas; Norman Weeden; Howard Thomas; Ian King
Journal:  New Phytol       Date:  2006       Impact factor: 10.151

4.  An SSR-based genetic linkage map for perennial ryegrass ( Lolium perenne L.).

Authors:  S. Jones; P. Dupal; L. Dumsday; J. Hughes; W. Forster
Journal:  Theor Appl Genet       Date:  2002-05-23       Impact factor: 5.699

5.  Genetic linkage mapping of an annual x perennial ryegrass population.

Authors:  S E Warnke; R E Barker; Geunhwa Jung; Sung-Chur Sim; M A Rouf Mian; M C Saha; L A Brilman; M P Dupal; J W Forster
Journal:  Theor Appl Genet       Date:  2004-04-07       Impact factor: 5.699

6.  RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross.

Authors:  D A Laurie; N Pratchett; J W Snape; J H Bezant
Journal:  Genome       Date:  1995-06       Impact factor: 2.166

7.  A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome.

Authors:  Joanne Russell; Allan Booth; John Fuller; Brian Harrower; Peter Hedley; Gordon Machray; Wayne Powell
Journal:  Genome       Date:  2004-04       Impact factor: 2.166

8.  Cross-species identification of Mendel's I locus.

Authors:  Ian Armstead; Iain Donnison; Sylvain Aubry; John Harper; Stefan Hörtensteiner; Caron James; Jan Mani; Matt Moffet; Helen Ougham; Luned Roberts; Ann Thomas; Norman Weeden; Howard Thomas; Ian King
Journal:  Science       Date:  2007-01-05       Impact factor: 47.728

Review 9.  Introgression mapping in the grasses.

Authors:  Julie King; Ian P Armstead; Iain S Donnison; John A Harper; Luned A Roberts; Howard Thomas; Helen Ougham; Ann Thomas; Lin Huang; Ian P King
Journal:  Chromosome Res       Date:  2007       Impact factor: 5.239

10.  Synteny between a major heading-date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading-date locus in rice.

Authors:  I P Armstead; L B Turner; M Farrell; L Skøt; P Gomez; T Montoya; I S Donnison; I P King; M O Humphreys
Journal:  Theor Appl Genet       Date:  2003-11-21       Impact factor: 5.699

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  11 in total

1.  Plant genome horizons: Michael Bennett's contribution to genome research.

Authors:  I J Leitch; M F Fay
Journal:  Ann Bot       Date:  2008-04       Impact factor: 4.357

2.  Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization.

Authors:  John Harper; Ian Armstead; Ann Thomas; Caron James; Dagmara Gasior; Maciej Bisaga; Luned Roberts; Ian King; Julie King
Journal:  Ann Bot       Date:  2011-04-12       Impact factor: 4.357

Review 3.  Progress towards elucidating the mechanisms of self-incompatibility in the grasses: further insights from studies in Lolium.

Authors:  Manfred Klaas; Bicheng Yang; Maurice Bosch; Daniel Thorogood; Chloe Manzanares; Ian P Armstead; F C H Franklin; Susanne Barth
Journal:  Ann Bot       Date:  2011-07-27       Impact factor: 4.357

Review 4.  Insights into the Response of Perennial Ryegrass to Abiotic Stress: Underlying Survival Strategies and Adaptation Mechanisms.

Authors:  Cuicui Miao; Yuting Zhang; Xuechun Bai; Tao Qin
Journal:  Life (Basel)       Date:  2022-06-08

5.  Exploitation of interspecific diversity for monocot crop improvement.

Authors:  J King; I Armstead; J Harper; L Ramsey; J Snape; R Waugh; C James; A Thomas; D Gasior; R Kelly; L Roberts; P Gustafson; I King
Journal:  Heredity (Edinb)       Date:  2013-01-16       Impact factor: 3.821

6.  EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.).

Authors:  Bruno Studer; Roland Kölliker; Hilde Muylle; Torben Asp; Ursula Frei; Isabel Roldán-Ruiz; Philippe Barre; Céline Tomaszewski; Helena Meally; Susanne Barth; Leif Skøt; Ian P Armstead; Oene Dolstra; Thomas Lübberstedt
Journal:  BMC Plant Biol       Date:  2010-08-16       Impact factor: 4.215

7.  Association of Candidate Genes With Submergence Response in Perennial Ryegrass.

Authors:  Xicheng Wang; Yiwei Jiang; Xiongwei Zhao; Xin Song; Xiangye Xiao; Zhongyou Pei; Huifen Liu
Journal:  Front Plant Sci       Date:  2017-05-16       Impact factor: 5.753

8.  Genetic diversity and structure of Lolium perenne ssp. multiflorum in California vineyards and orchards indicate potential for spread of herbicide resistance via gene flow.

Authors:  Elizabeth Karn; Marie Jasieniuk
Journal:  Evol Appl       Date:  2017-04-18       Impact factor: 5.183

9.  Association of candidate genes with drought tolerance traits in diverse perennial ryegrass accessions.

Authors:  Xiaoqing Yu; Guihua Bai; Shuwei Liu; Na Luo; Ying Wang; Douglas S Richmond; Paula M Pijut; Scott A Jackson; Jianming Yu; Yiwei Jiang
Journal:  J Exp Bot       Date:  2013-02-05       Impact factor: 6.992

10.  SSR-patchwork: An optimized protocol to obtain a rapid and inexpensive SSR library using first-generation sequencing technology.

Authors:  Antonietta Di Maio; Olga De Castro
Journal:  Appl Plant Sci       Date:  2013-01-02       Impact factor: 1.936

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