Literature DB >> 14583057

Ultrafast excited-state dynamics of adenine and monomethylated adenines in solution: implications for the nonradiative decay mechanism.

Boiko Cohen1, Patrick M Hare, Bern Kohler.   

Abstract

The DNA base adenine and four monomethylated adenines were studied in solution at room temperature by femtosecond pump-probe spectroscopy. Transient absorption at visible probe wavelengths was used to directly observe relaxation of the lowest excited singlet state (S(1) state) populated by a UV pump pulse. In H(2)O, transient absorption signals from adenine decay biexponentially with lifetimes of 0.18 +/- 0.03 ps and 8.8 +/- 1.2 ps. In contrast, signals from monomethylated adenines decay monoexponentially. The S(1) lifetimes of 1-, 3-, and 9-methyladenine are similar to one another and are all below 300 fs, while 7-methyladenine has a significantly longer lifetime (tau = 4.23 +/- 0.13 ps). On this basis, the biexponential signal of adenine is assigned to an equilibrium mixture of the 7H- and 9H-amino tautomers. Excited-state absorption (ESA) by 9-methyladenine is 50% stronger than by 7-methyladenine. Assuming that ESA by the corresponding tautomers of adenine is unchanged, we estimate the population of 7H-adenine in H(2)O at room temperature to be 22 +/- 4% (estimated standard deviation). To understand how the environment affects nonradiative decay, we performed the first solvent-dependent study of nucleobase dynamics on the ultrafast time scale. In acetonitrile, both lowest energy tautomers of adenine are present in roughly similar proportions as in water. The lifetimes of the 9-substituted adenines depend somewhat more sensitively on the solvent than those of the 7-substituted adenines. Transient signals for adenine in H(2)O and D(2)O are identical. These solvent effects strongly suggest that excited-state tautomerization is not an important nonradiative decay pathway. Instead, the data are most consistent with electronic energy relaxation due to state crossings between the optically prepared (1)pipi* state and one or more (1)npi* states and the electronic ground state. The pattern of lifetimes measured for the monomethylated adenines suggests a special role for the (1)npi* state associated with the N7 electron lone pair.

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Year:  2003        PMID: 14583057     DOI: 10.1021/ja035628z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Primary processes underlying the photostability of isolated DNA bases: adenine.

Authors:  Helmut Satzger; Dave Townsend; Marek Z Zgierski; Serguei Patchkovskii; Susanne Ullrich; Albert Stolow
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-27       Impact factor: 11.205

2.  Influence of base stacking on excited-state behavior of polyadenine in water, based on time-dependent density functional calculations.

Authors:  F Santoro; V Barone; R Improta
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-01       Impact factor: 11.205

3.  Adenine and 2-aminopurine: paradigms of modern theoretical photochemistry.

Authors:  Luis Serrano-Andrés; Manuela Merchán; Antonio C Borin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

4.  Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study.

Authors:  Lluís Blancafort; Boiko Cohen; Patrick M Hare; Bern Kohler; Michael A Robb
Journal:  J Phys Chem A       Date:  2005-05-26       Impact factor: 2.781

5.  Gas-phase hydration thermochemistry of sodiated and potassiated nucleic acid bases.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2012-07-21       Impact factor: 3.109

6.  On the Origin of the Canonical Nucleobases: An Assessment of Selection Pressures across Chemical and Early Biological Evolution.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Isr J Chem       Date:  2013-06       Impact factor: 3.333

7.  The excited-state lifetimes in a G x C DNA duplex are nearly independent of helix conformation and base-pairing motif.

Authors:  Kimberly de la Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

8.  Nature of guanine oxidation in RNA via the flash-quench technique versus direct oxidation by a metal oxo complex.

Authors:  Dana R Holcomb; Patricia A Ropp; Elizabeth C Theil; H Holden Thorp
Journal:  Inorg Chem       Date:  2010-02-01       Impact factor: 5.165

9.  Exploring the Influence of Intermolecular Interactions in Prebiotic Chemistry Using Laser Spectroscopy and Calculations.

Authors:  Ander Camiruaga; Imanol Usabiaga; Camilla Calabrese; Iker Lamas; Francisco J Basterretxea; José A Fernández
Journal:  Chemistry       Date:  2021-12-02       Impact factor: 5.020

10.  Microhydration of Deprotonated Nucleobases.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2016-05-13       Impact factor: 3.109

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