Literature DB >> 16803961

Primary processes underlying the photostability of isolated DNA bases: adenine.

Helmut Satzger1, Dave Townsend1, Marek Z Zgierski1, Serguei Patchkovskii1, Susanne Ullrich2, Albert Stolow3.   

Abstract

The UV chromophores in DNA are the nucleic bases themselves, and it is their photophysics and photochemistry that govern the intrinsic photostability of DNA. Because stability is related to the conversion of dangerous electronic to less-dangerous vibrational energy, we study ultrafast electronic relaxation processes in the DNA base adenine. We excite adenine, isolated in a molecular beam, to its pipi* state and follow its relaxation dynamics using femtosecond time-resolved photoelectron spectroscopy. To discern which processes are important on which timescales, we compare adenine with 9-methyl adenine. Methylation blocks the site of the much-discussed pisigma* state that had been thought, until now, minor. Time-resolved photoelectron spectroscopy reveals that, although adenine and 9-methyl adenine show almost identical timescales for the processes involved, the decay pathways are quite different. Importantly, we confirm that in adenine at 267-nm excitation, the pisigma* state plays a major role. We discuss these results in the context of recent experimental and theoretical studies on adenine, proposing a model that accounts for all known results, and consider the relationship between these studies and electron-induced damage in DNA.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16803961      PMCID: PMC1502434          DOI: 10.1073/pnas.0602663103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Intrinsic lifetimes of the excited state of DNA and RNA bases.

Authors:  Hyuk Kang; Kang Taek Lee; Boyong Jung; Yeon Jae Ko; Seong Keun Kim
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

2.  Damage to model DNA fragments from very low-energy (<1 eV) electrons.

Authors:  Joanna Berdys; Iwona Anusiewicz; Piotr Skurski; Jack Simons
Journal:  J Am Chem Soc       Date:  2004-05-26       Impact factor: 15.419

Review 3.  Femtosecond time-resolved photoelectron spectroscopy.

Authors:  Albert Stolow; Arthur E Bragg; Daniel M Neumark
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

4.  Photostability of isolated and paired nucleobases: N-H dissociation of adenine and hydrogen transfer in its base pairs examined by laser spectroscopy.

Authors:  Isabel Hünig; Christian Plützer; Kai A Seefeld; Dennis Löwenich; Michael Nispel; Karl Kleinermanns
Journal:  Chemphyschem       Date:  2004-09-20       Impact factor: 3.102

5.  Ab initio studies on the radiationless decay mechanisms of the lowest excited singlet states of 9H-adenine.

Authors:  Serhiy Perun; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

6.  On the origin of the ultrafast internal conversion of electronically excited pyrimidine bases.

Authors:  Marek Z Zgierski; Serguei Patchkovskii; Takashige Fujiwara; Edward C Lim
Journal:  J Phys Chem A       Date:  2005-10-27       Impact factor: 2.781

7.  A TDDFT study of the optical response of DNA bases, base pairs, and their tautomers in the gas phase.

Authors:  Argyrios Tsolakidis; Efthimios Kaxiras
Journal:  J Phys Chem A       Date:  2005-03-17       Impact factor: 2.781

8.  Excited-state potential energy surface for the photophysics of adenine.

Authors:  Lluís Blancafort
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

9.  Global target analysis of picosecond chlorophyll fluorescence kinetics from pea chloroplasts: A new approach to the characterization of the primary processes in photosystem II alpha- and beta-units.

Authors:  T A Roelofs; C H Lee; A R Holzwarth
Journal:  Biophys J       Date:  1992-05       Impact factor: 4.033

10.  Excited states dynamics of DNA and RNA bases: characterization of a stepwise deactivation pathway in the gas phase.

Authors:  Clélia Canuel; Michel Mons; François Piuzzi; Benjamin Tardivel; Iliana Dimicoli; Mohamed Elhanine
Journal:  J Chem Phys       Date:  2005-02-15       Impact factor: 3.488

View more
  11 in total

1.  Photochemical pathways in nucleobases measured with an X-ray FEL.

Authors:  Thomas J A Wolf; Markus Gühr
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-05-20       Impact factor: 4.226

Review 2.  Photosynthesis and photo-stability of nucleic acids in prebiotic extraterrestrial environments.

Authors:  Scott A Sandford; Partha P Bera; Timothy J Lee; Christopher K Materese; Michel Nuevo
Journal:  Top Curr Chem       Date:  2015

3.  Relaxation mechanisms of UV-photoexcited DNA and RNA nucleobases.

Authors:  Mario Barbatti; Adélia J A Aquino; Jaroslaw J Szymczak; Dana Nachtigallová; Pavel Hobza; Hans Lischka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-29       Impact factor: 11.205

4.  On the origin of life in the zinc world: 1. Photosynthesizing, porous edifices built of hydrothermally precipitated zinc sulfide as cradles of life on Earth.

Authors:  Armen Y Mulkidjanian
Journal:  Biol Direct       Date:  2009-08-24       Impact factor: 4.540

5.  Monitoring Non-Adiabatic Dynamics of the RNA Base Uracil by UV-Pump-IR-Probe Spectroscopy.

Authors:  Benjamin P Fingerhut; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Phys Chem Lett       Date:  2013-06-06       Impact factor: 6.475

6.  UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases.

Authors:  Tomohisa Takaya; Charlene Su; Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-22       Impact factor: 11.205

Review 7.  Recent advances in experimental techniques to probe fast excited-state dynamics in biological molecules in the gas phase: dynamics in nucleotides, amino acids and beyond.

Authors:  Michael Staniforth; Vasilios G Stavros
Journal:  Proc Math Phys Eng Sci       Date:  2013-11-08       Impact factor: 2.704

8.  Conformational polymorphism or structural invariance in DNA photoinduced lesions: implications for repair rates.

Authors:  François Dehez; Hugo Gattuso; Emmanuelle Bignon; Christophe Morell; Elise Dumont; Antonio Monari
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

9.  XUV excitation followed by ultrafast non-adiabatic relaxation in PAH molecules as a femto-astrochemistry experiment.

Authors:  A Marciniak; V Despré; T Barillot; A Rouzée; M C E Galbraith; J Klei; C-H Yang; C T L Smeenk; V Loriot; S Nagaprasad Reddy; A G G M Tielens; S Mahapatra; A I Kuleff; M J J Vrakking; F Lépine
Journal:  Nat Commun       Date:  2015-08-13       Impact factor: 14.919

10.  Probing the Conical Intersection Dynamics of the RNA Base Uracil by UV-Pump Stimulated-Raman-Probe Signals; Ab Initio Simulations.

Authors:  Benjamin P Fingerhut; Konstantin E Dorfman; Shaul Mukamel
Journal:  J Chem Theory Comput       Date:  2014-01-22       Impact factor: 6.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.