Literature DB >> 14582999

Water molecules in the schiff base region of bacteriorhodopsin.

Mikihiro Shibata1, Taro Tanimoto, Hideki Kandori.   

Abstract

The Schiff base region of bacteriorhodopsin (BR), a light-driven proton pump, contains a pentagonal cluster, being composed of three water molecules and one oxygen each of Asp85 and Asp212. Asp85 and Asp212 are located at similar distances from the retinal Schiff base, whereas the Schiff base proton is transferred only to Asp85 during the pump function. The present FTIR study experimentally established the stretching vibration of water402 hydrating with Asp85 by use of various BR mutants, whose frequency (2171 cm-1 as the O-D stretch) indicates very strong hydrogen bond.

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Year:  2003        PMID: 14582999     DOI: 10.1021/ja037343s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Structural model of channelrhodopsin.

Authors:  Hiroshi C Watanabe; Kai Welke; Franziska Schneider; Satoshi Tsunoda; Feng Zhang; Karl Deisseroth; Peter Hegemann; Marcus Elstner
Journal:  J Biol Chem       Date:  2012-01-11       Impact factor: 5.157

2.  Photoreactions and structural changes of anabaena sensory rhodopsin.

Authors:  Akira Kawanabe; Hideki Kandori
Journal:  Sensors (Basel)       Date:  2009-12-03       Impact factor: 3.576

3.  Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.

Authors:  Motohiro Ito; Yuki Sudo; Yuji Furutani; Takashi Okitsu; Akimori Wada; Michio Homma; John L Spudich; Hideki Kandori
Journal:  Biochemistry       Date:  2008-05-15       Impact factor: 3.162

4.  Rational design of a colorimetric pH sensor from a soluble retinoic acid chaperone.

Authors:  Tetyana Berbasova; Meisam Nosrati; Chrysoula Vasileiou; Wenjing Wang; Kin Sing Stephen Lee; Ipek Yapici; James H Geiger; Babak Borhan
Journal:  J Am Chem Soc       Date:  2013-10-18       Impact factor: 15.419

5.  FTIR and Raman Spectroscopy of Rhodopsins.

Authors:  Hideki Kandori; Yasuhisa Mizutani
Journal:  Methods Mol Biol       Date:  2022

6.  Modulation of Light Energy Transfer from Chromophore to Protein in the Channelrhodopsin ReaChR.

Authors:  Joel C D Kaufmann; Benjamin S Krause; Suliman Adam; Eglof Ritter; Igor Schapiro; Peter Hegemann; Franz J Bartl
Journal:  Biophys J       Date:  2020-07-10       Impact factor: 4.033

7.  Identification of FTIR bands due to internal water molecules around the quinone binding sites in the reaction center from Rhodobacter sphaeroides.

Authors:  Tatsuya Iwata; Mark L Paddock; Melvin Y Okamura; Hideki Kandori
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

8.  Active site structure and absorption spectrum of channelrhodopsin-2 wild-type and C128T mutant.

Authors:  Yanan Guo; Franziska E Beyle; Beatrix M Bold; Hiroshi C Watanabe; Axel Koslowski; Walter Thiel; Peter Hegemann; Marco Marazzi; Marcus Elstner
Journal:  Chem Sci       Date:  2016-02-26       Impact factor: 9.825

9.  A Water-Bridged Cysteine-Cysteine Redox Regulation Mechanism in Bacterial Protein Tyrosine Phosphatases.

Authors:  Jean B Bertoldo; Tiago Rodrigues; Lavinia Dunsmore; Francesco A Aprile; Marta C Marques; Leonardo A Rosado; Omar Boutureira; Thomas B Steinbrecher; Woody Sherman; Francisco Corzana; Hernán Terenzi; Gonçalo J L Bernardes
Journal:  Chem       Date:  2017-10-12       Impact factor: 22.804

10.  X-ray structure analysis of bacteriorhodopsin at 1.3 Å resolution.

Authors:  Nagayuki Hasegawa; Hideyuki Jonotsuka; Kunio Miki; Kazuki Takeda
Journal:  Sci Rep       Date:  2018-09-03       Impact factor: 4.379

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