Literature DB >> 18479149

Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.

Motohiro Ito1, Yuki Sudo, Yuji Furutani, Takashi Okitsu, Akimori Wada, Michio Homma, John L Spudich, Hideki Kandori.   

Abstract

Sensory rhodopsin II (SRII, also called pharaonis phoborhodopsin, ppR) is responsible for negative phototaxis in Natronomonas pharaonis. Photoisomerization of the retinal chromophore from all- trans to 13- cis initiates conformational changes in the protein, leading to activation of the cognate transducer protein (HtrII). We previously observed enhancement of the C 14-D stretching vibration of the retinal chromophore at 2244 cm (-1) upon formation of the K state and interpreted that a steric constraint occurs at the C 14D group in SRII K. Here, we identify the counterpart of the C 14D group as Thr204, because the C 14-D stretching signal disappeared in T204A, T204S, and T204C mutants as well as a C 14-HOOP (hydrogen out-of-plane) vibration at 864 cm (-1). Although the K state of the wild-type bacteriorhodopsin (BR), a light-driven proton pump, possesses neither 2244 nor 864 cm (-1) bands, both signals appeared for the K state of a triple mutant of BR that functions as a light sensor (P200T/V210Y/A215T). We found a positive correlation between these vibrational amplitudes of the C 14 atom at 77 K and the physiological phototaxis response. These observations strongly suggest that the steric constraint between the C 14 group of retinal and Thr204 of the protein is a prerequisite for light-signal transduction by SRII.

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Year:  2008        PMID: 18479149      PMCID: PMC3638029          DOI: 10.1021/bi8003507

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  39 in total

1.  Crystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction.

Authors:  H Luecke; B Schobert; J K Lanyi; E N Spudich; J L Spudich
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

2.  Interaction of Asn105 with the retinal chromophore during photoisomerization of pharaonis phoborhodopsin.

Authors:  Hideki Kandori; Kazumi Shimono; Yoshinori Shichida; Naoki Kamo
Journal:  Biochemistry       Date:  2002-04-09       Impact factor: 3.162

3.  Early structural rearrangements in the photocycle of an integral membrane sensory receptor.

Authors:  Karl Edman; Antoine Royant; Peter Nollert; Carrie A Maxwell; Eva Pebay-Peyroula; Javier Navarro; Richard Neutze; Ehud M Landau
Journal:  Structure       Date:  2002-04       Impact factor: 5.006

4.  Structural changes during the formation of early intermediates in the bacteriorhodopsin photocycle.

Authors:  Shigehiko Hayashi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

5.  High-resolution X-ray structure of an early intermediate in the bacteriorhodopsin photocycle.

Authors:  K Edman; P Nollert; A Royant; H Belrhali; E Pebay-Peyroula; J Hajdu; R Neutze; E M Landau
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

6.  Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin.

Authors:  H Kandori; K Shimono; Y Sudo; M Iwamoto; Y Shichida; N Kamo
Journal:  Biochemistry       Date:  2001-08-07       Impact factor: 3.162

7.  Internal water molecules of pharaonis phoborhodopsin studied by low-temperature infrared spectroscopy.

Authors:  H Kandori; Y Furutani; K Shimono; Y Shichida; N Kamo
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

8.  Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.

Authors:  Brigitte Schobert; Jill Cupp-Vickery; Viktor Hornak; Steven Smith; Janos Lanyi
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

9.  Specific damage induced by X-ray radiation and structural changes in the primary photoreaction of bacteriorhodopsin.

Authors:  Yasuhiro Matsui; Keisuke Sakai; Midori Murakami; Yoshitsugu Shiro; Shin ichi Adachi; Hideo Okumura; Tsutomu Kouyama
Journal:  J Mol Biol       Date:  2002-11-29       Impact factor: 5.469

10.  Halide binding by the D212N mutant of Bacteriorhodopsin affects hydrogen bonding of water in the active site.

Authors:  Mikihiro Shibata; Maiko Yoshitsugu; Noriko Mizuide; Kunio Ihara; Hideki Kandori
Journal:  Biochemistry       Date:  2007-06-05       Impact factor: 3.162

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  6 in total

1.  A microbial rhodopsin with a unique retinal composition shows both sensory rhodopsin II and bacteriorhodopsin-like properties.

Authors:  Yuki Sudo; Kunio Ihara; Shiori Kobayashi; Daisuke Suzuki; Hiroki Irieda; Takashi Kikukawa; Hideki Kandori; Michio Homma
Journal:  J Biol Chem       Date:  2010-12-06       Impact factor: 5.157

Review 2.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

Review 3.  Mechanism divergence in microbial rhodopsins.

Authors:  John L Spudich; Oleg A Sineshchekov; Elena G Govorunova
Journal:  Biochim Biophys Acta       Date:  2013-07-03

4.  A transporter converted into a sensor, a phototaxis signaling mutant of bacteriorhodopsin at 3.0 Å.

Authors:  Elena N Spudich; Gabriel Ozorowski; Eric V Schow; Douglas J Tobias; John L Spudich; Hartmut Luecke
Journal:  J Mol Biol       Date:  2011-11-22       Impact factor: 5.469

5.  Protein-protein interaction changes in an archaeal light-signal transduction.

Authors:  Hideki Kandori; Yuki Sudo; Yuji Furutani
Journal:  J Biomed Biotechnol       Date:  2010-06-29

Review 6.  Phototactic and chemotactic signal transduction by transmembrane receptors and transducers in microorganisms.

Authors:  Daisuke Suzuki; Hiroki Irieda; Michio Homma; Ikuro Kawagishi; Yuki Sudo
Journal:  Sensors (Basel)       Date:  2010-04-20       Impact factor: 3.576

  6 in total

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