Literature DB >> 32697975

Modulation of Light Energy Transfer from Chromophore to Protein in the Channelrhodopsin ReaChR.

Joel C D Kaufmann1, Benjamin S Krause2, Suliman Adam3, Eglof Ritter4, Igor Schapiro3, Peter Hegemann2, Franz J Bartl5.   

Abstract

The function of photoreceptors relies on efficient transfer of absorbed light energy from the chromophore to the protein to drive conformational changes that ultimately generate an output signal. In retinal-binding proteins, mainly two mechanisms exist to store the photon energy after photoisomerization: 1) conformational distortion of the prosthetic group retinal, and 2) charge separation between the protonated retinal Schiff base (RSBH+) and its counterion complex. Accordingly, energy transfer to the protein is achieved by chromophore relaxation and/or reduction of the charge separation in the RSBH+-counterion complex. Combining FTIR and UV-Vis spectroscopy along with molecular dynamics simulations, we show here for the widely used, red-activatable Volvox carteri channelrhodopsin-1 derivate ReaChR that energy storage and transfer into the protein depends on the protonation state of glutamic acid E163 (Ci1), one of the counterions of the RSBH+. Ci1 retains a pKa of 7.6 so that both its protonated and deprotonated forms equilibrate at physiological conditions. Protonation of Ci1 leads to a rigid hydrogen-bonding network in the active-site region. This stabilizes the distorted conformation of the retinal after photoactivation and decelerates energy transfer into the protein by impairing the release of the strain energy. In contrast, with deprotonated Ci1 or removal of the Ci1 glutamate side chain, the hydrogen-bonded system is less rigid, and energy transfer by chromophore relaxation is accelerated. Based on the hydrogen out-of-plane (HOOP) band decay kinetics, we determined the activation energy for these processes in dependence of the Ci1 protonation state.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32697975      PMCID: PMC7399494          DOI: 10.1016/j.bpj.2020.06.031

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  71 in total

1.  The chromophore structure of the long-lived intermediate of the C128T channelrhodopsin-2 variant.

Authors:  Sara Bruun; Hendrik Naumann; Uwe Kuhlmann; Claudia Schulz; Katja Stehfest; Peter Hegemann; Peter Hildebrandt
Journal:  FEBS Lett       Date:  2011-11-13       Impact factor: 4.124

2.  The retinal structure of channelrhodopsin-2 assessed by resonance Raman spectroscopy.

Authors:  Melanie Nack; Ionela Radu; Christian Bamann; Ernst Bamberg; Joachim Heberle
Journal:  FEBS Lett       Date:  2009-10-23       Impact factor: 4.124

3.  Photochemical Properties of the Red-shifted Channelrhodopsin Chrimson.

Authors:  David Urmann; Charlotte Lorenz; Stephanie M Linker; Markus Braun; Josef Wachtveitl; Christian Bamann
Journal:  Photochem Photobiol       Date:  2017-05       Impact factor: 3.421

4.  Interpretation of the resonance Raman spectrum of bathorhodopsin based on visual pigment analogues.

Authors:  G Eyring; B Curry; R Mathies; R Fransen; I Palings; J Lugtenburg
Journal:  Biochemistry       Date:  1980-05-27       Impact factor: 3.162

5.  Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy.

Authors:  S O Smith; J Lugtenburg; R A Mathies
Journal:  J Membr Biol       Date:  1985       Impact factor: 1.843

6.  Role of a helix B lysine residue in the photoactive site in channelrhodopsins.

Authors:  Hai Li; Elena G Govorunova; Oleg A Sineshchekov; John L Spudich
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

7.  SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.

Authors:  Marco Biasini; Stefan Bienert; Andrew Waterhouse; Konstantin Arnold; Gabriel Studer; Tobias Schmidt; Florian Kiefer; Tiziano Gallo Cassarino; Martino Bertoni; Lorenza Bordoli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

8.  Reaction dynamics of the chimeric channelrhodopsin C1C2.

Authors:  Yusaku Hontani; Marco Marazzi; Katja Stehfest; Tilo Mathes; Ivo H M van Stokkum; Marcus Elstner; Peter Hegemann; John T M Kennis
Journal:  Sci Rep       Date:  2017-08-03       Impact factor: 4.379

9.  Active site structure and absorption spectrum of channelrhodopsin-2 wild-type and C128T mutant.

Authors:  Yanan Guo; Franziska E Beyle; Beatrix M Bold; Hiroshi C Watanabe; Axel Koslowski; Walter Thiel; Peter Hegemann; Marco Marazzi; Marcus Elstner
Journal:  Chem Sci       Date:  2016-02-26       Impact factor: 9.825

10.  CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.

Authors:  Jumin Lee; Xi Cheng; Jason M Swails; Min Sun Yeom; Peter K Eastman; Justin A Lemkul; Shuai Wei; Joshua Buckner; Jong Cheol Jeong; Yifei Qi; Sunhwan Jo; Vijay S Pande; David A Case; Charles L Brooks; Alexander D MacKerell; Jeffery B Klauda; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2015-12-03       Impact factor: 6.006

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  4 in total

Review 1.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

2.  Time-resolved photoacoustics of channelrhodopsins: early energetics and light-driven volume changes.

Authors:  Maria Walter; Luiz Schubert; Joachim Heberle; Ramona Schlesinger; Aba Losi
Journal:  Photochem Photobiol Sci       Date:  2022-10-23       Impact factor: 4.328

3.  Pro219 is an electrostatic color determinant in the light-driven sodium pump KR2.

Authors:  Yuta Nakajima; Laura Pedraza-González; Leonardo Barneschi; Keiichi Inoue; Massimo Olivucci; Hideki Kandori
Journal:  Commun Biol       Date:  2021-10-13

Review 4.  Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol.

Authors:  Laura Pedraza-González; Luca De Vico; Massimo Olivucci; Leonardo Barneschi; Daniele Padula
Journal:  Top Curr Chem (Cham)       Date:  2022-03-15
  4 in total

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