Literature DB >> 14576309

Recognition of threosyl nucleotides by DNA and RNA polymerases.

Veerle Kempeneers1, Karen Vastmans, Jef Rozenski, Piet Herdewijn.   

Abstract

Alpha-L-threose nucleic acids (TNA) are potentially natural nucleic acids that could have acted as an evolutionary alternative to RNA. We determined whether DNA or RNA polymerases could recognize phosphorylated threosyl nucleosides. We found that for both the Vent (exo-) DNA polymerase and HIV reverse transcriptase K(m) values were increased and kcat values decreased for the incorporation of tTTP in comparison to their natural counterparts. Our results suggest that TNA may have played a role in the evolution of the DNA-RNA-protein world. Thus, TNA may be a candidate for further studies in evolutionary chemistry and biology.

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Year:  2003        PMID: 14576309      PMCID: PMC275475          DOI: 10.1093/nar/gkg833

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  Chemical etiology of nucleic acid structure: the alpha-threofuranosyl-(3'-->2') oligonucleotide system.

Authors:  K Schöning; P Scholz; S Guntha; X Wu; R Krishnamurthy; A Eschenmoser
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

2.  Base-pairing systems related to TNA: alpha-threofuranosyl oligonucleotides containing phosphoramidate linkages.

Authors:  Xiaolin Wu; Sreenivasulu Guntha; Mathias Ferencic; Ramanarayanan Krishnamurthy; Albert Eschenmoser
Journal:  Org Lett       Date:  2002-04-18       Impact factor: 6.005

3.  Analysis of Oligonucleotides by HPLC-Electrospray Ionization Mass Spectrometry.

Authors:  A Apffel; J A Chakel; S Fischer; K Lichtenwalter; W S Hancock
Journal:  Anal Chem       Date:  1997-04-01       Impact factor: 6.986

4.  DNA polymerase-mediated DNA synthesis on a TNA template.

Authors:  John C Chaput; Justin K Ichida; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2003-01-29       Impact factor: 15.419

5.  Reverse transcriptase incorporation of 1,5-anhydrohexitol nucleotides.

Authors:  K Vastmans; M Froeyen; L Kerremans; S Pochet; P Herdewijn
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

6.  DNA polymerase insertion fidelity. Gel assay for site-specific kinetics.

Authors:  M S Boosalis; J Petruska; M F Goodman
Journal:  J Biol Chem       Date:  1987-10-25       Impact factor: 5.157

7.  Recognition of HNA and 1,5-anhydrohexitol nucleotides by DNA metabolizing enzymes.

Authors:  Karen Vastmans; Jef Rozenski; Arthur Van Aerschot; Piet Herdewijn
Journal:  Biochim Biophys Acta       Date:  2002-05-20

8.  Enzymatic incorporation in DNA of 1,5-anhydrohexitol nucleotides.

Authors:  K Vastmans; S Pochet; A Peys; L Kerremans; A Van Aerschot; C Hendrix; P Marlière; P Herdewijn
Journal:  Biochemistry       Date:  2000-10-24       Impact factor: 3.162

9.  TNA synthesis by DNA polymerases.

Authors:  John C Chaput; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2003-08-06       Impact factor: 15.419

10.  CONVERSION OF MONO- AND OLIGODEOXYRIBONUCLEOTIDES TO 5-TRIPHOSPHATES.

Authors:  D E HOARD; D G OTT
Journal:  J Am Chem Soc       Date:  1965-04-20       Impact factor: 15.419

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  15 in total

1.  Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor.

Authors:  Hanyang Yu; Su Zhang; John C Chaput
Journal:  Nat Chem       Date:  2012-01-10       Impact factor: 24.427

2.  Fluorescence-Activated Droplet Sorting for Single-Cell Directed Evolution.

Authors:  Derek Vallejo; Ali Nikoomanzar; Brian M Paegel; John C Chaput
Journal:  ACS Synth Biol       Date:  2019-05-23       Impact factor: 5.110

3.  Introducing a New Bond-Forming Activity in an Archaeal DNA Polymerase by Structure-Guided Enzyme Redesign.

Authors:  Tushar Aggarwal; William A Hansen; Jonathan Hong; Abir Ganguly; Darrin M York; Sagar D Khare; Enver Cagri Izgu
Journal:  ACS Chem Biol       Date:  2022-07-01       Impact factor: 4.634

4.  α,β-D-constrained nucleic acids are strong terminators of thermostable DNA polymerases in polymerase chain reaction.

Authors:  Olivier Martínez; Vincent Ecochard; Sabrina Mahéo; Grégori Gross; Pierre Bodin; Justin Teissié; Jean-Marc Escudier; Laurent Paquereau
Journal:  PLoS One       Date:  2011-10-03       Impact factor: 3.240

5.  Investigation of the DNA-dependent cyclohexenyl nucleic acid polymerization and the cyclohexenyl nucleic acid-dependent DNA polymerization.

Authors:  Veerle Kempeneers; Marleen Renders; Matheus Froeyen; Piet Herdewijn
Journal:  Nucleic Acids Res       Date:  2005-07-12       Impact factor: 16.971

6.  Kinetic analysis of an efficient DNA-dependent TNA polymerase.

Authors:  Allen Horhota; Keyong Zou; Justin K Ichida; Biao Yu; Larry W McLaughlin; Jack W Szostak; John C Chaput
Journal:  J Am Chem Soc       Date:  2005-05-25       Impact factor: 15.419

Review 7.  Recent progress toward the templated synthesis and directed evolution of sequence-defined synthetic polymers.

Authors:  Yevgeny Brudno; David R Liu
Journal:  Chem Biol       Date:  2009-03-27

8.  Detection of potential TNA and RNA nucleoside precursors in a prebiotic mixture by pure shift diffusion-ordered NMR spectroscopy.

Authors:  Saidul Islam; Juan A Aguilar; Matthew W Powner; Mathias Nilsson; Gareth A Morris; John D Sutherland
Journal:  Chemistry       Date:  2013-02-01       Impact factor: 5.236

9.  A general strategy for expanding polymerase function by droplet microfluidics.

Authors:  Andrew C Larsen; Matthew R Dunn; Andrew Hatch; Sujay P Sau; Cody Youngbull; John C Chaput
Journal:  Nat Commun       Date:  2016-04-05       Impact factor: 14.919

10.  An in vitro selection system for TNA.

Authors:  Justin K Ichida; Keyong Zou; Allen Horhota; Biao Yu; Larry W McLaughlin; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

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