Literature DB >> 14573956

Twinned crystals and anomalous phasing.

Zbigniew Dauter1.   

Abstract

Merohedral or pseudomerohedral twinning of crystals cannot be identified from inspection of the diffraction patterns. Several methods for the identification of twinning and the estimation of the twin fraction are suitable for macromolecular crystals and all are based on the statistical properties of the measured diffraction intensities. If the crystal twin fraction is estimated and is not too close to 0.5, the diffraction data can be detwinned; that is, related to the individual crystal specimen. However, the detwinning procedure invariably introduces additional inaccuracies to the estimated intensities, which substantially increase when the twin fraction approaches 0.5. In some cases, a crystal structure can be solved with the original twinned data by standard techniques such as molecular replacement, multiple isomorphous replacement or multiwavelength anomalous diffraction. Test calculations on data collected from a twinned crystal of gpD, the bacteriophage lambda capsid protein, show that the single-wavelength anomalous diffraction (SAD) method can be used to solve its structure even if the data set corresponds to a perfectly twinned crystal with a twin fraction of 0.5.

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Year:  2003        PMID: 14573956     DOI: 10.1107/s0907444903021085

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  20 in total

1.  Physical detwinning of hemihedrally twinned hexagonal crystals of bacteriorhodopsin.

Authors:  Rouslan Efremov; Rouslan Moukhametzianov; Georg Büldt; Valentin Gordeliy
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

2.  Crystallographic study of a MATE transporter presents a difficult case in structure determination with low-resolution, anisotropic data and crystal twinning.

Authors:  Jindrich Symersky; Yi Guo; Jimin Wang; Min Lu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

3.  Preliminary X-ray analysis of cellobiohydrolase Cel7B from Melanocarpus albomyces.

Authors:  Tarja Parkkinen; Anu Koivula; Jari Vehmaanperä; Juha Rouvinen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-25

4.  Crystallization and preliminary crystallographic analysis of merohedrally twinned crystals of MJ0729, a CBS-domain protein from Methanococcus jannaschii.

Authors:  Pablo Fernández-Millán; Danel Kortazar; María Lucas; María Luz Martínez-Chantar; Egoitz Astigarraga; José Andrés Fernández; Olatz Sabas; Armando Albert; Jose M Mato; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-07

5.  Purification, crystallization and preliminary crystallographic analysis of protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homologue of gamma-AMPK.

Authors:  Inmaculada Gómez García; Danel Kortázar; Iker Oyenarte; José María Mato; María Luz Martínez-Chantar; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-07-30

Review 6.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

7.  Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Authors:  Ayaka Harada; Yukari Sato; Naofumi Kamimura; Nagarajan Venugopalan; Eiji Masai; Toshiya Senda
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-11-30       Impact factor: 1.056

8.  Polarization-resolved second-harmonic generation microscopy as a method to visualize protein-crystal domains.

Authors:  Emma L DeWalt; Victoria J Begue; Judith A Ronau; Shane Z Sullivan; Chittaranjan Das; Garth J Simpson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-12-20

9.  Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex.

Authors:  Halil Aydin; Azmiri Sultana; Sheng Li; Annoj Thavalingam; Jeffrey E Lee
Journal:  Nature       Date:  2016-06-15       Impact factor: 49.962

10.  Experimental phasing: best practice and pitfalls.

Authors:  Airlie J McCoy; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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