Literature DB >> 20707333

Development and validation of a ReaxFF reactive force field for Cu cation/water interactions and copper metal/metal oxide/metal hydroxide condensed phases.

Adri C T van Duin1, Vyacheslav S Bryantsev, Mamadou S Diallo, William A Goddard, Obaidur Rahaman, Douglas J Doren, David Raymand, Kersti Hermansson.   

Abstract

To enable large-scale reactive dynamic simulations of copper oxide/water and copper ion/water interactions we have extended the ReaxFF reactive force field framework to Cu/O/H interactions. To this end, we employed a multistage force field development strategy, where the initial training set (containing metal/metal oxide/metal hydroxide condensed phase data and [Cu(H(2)O)(n)](2+) cluster structures and energies) is augmented by single-point quantum mechanices (QM) energies from [Cu(H(2)O)(n)](2+) clusters abstracted from a ReaxFF molecular dynamics simulation. This provides a convenient strategy to both enrich the training set and to validate the final force field. To further validate the force field description we performed molecular dynamics simulations on Cu(2+)/water systems. We found good agreement between our results and earlier experimental and QM-based molecular dynamics work for the average Cu/water coordination, Jahn-Teller distortion, and inversion in [Cu(H(2)O)(6)](2+) clusters and first- and second-shell O-Cu-O angular distributions, indicating that this force field gives a satisfactory description of the Cu-cation/water interactions. We believe that this force field provides a computationally convenient method for studying the solution and surface chemistry of metal cations and metal oxides and, as such, has applications for studying protein/metal cation complexes, pH-dependent crystal growth/dissolution, and surface catalysis.

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Year:  2010        PMID: 20707333      PMCID: PMC4224311          DOI: 10.1021/jp102272z

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  16 in total

1.  First solvation shell of the Cu(II) aqua ion: evidence for fivefold coordination.

Authors:  A Pasquarello; I Petri; P S Salmon; O Parisel; R Car; E Toth; D H Powell; H E Fischer; L Helm; A Merbach
Journal:  Science       Date:  2001-02-02       Impact factor: 47.728

2.  Jahn-Teller effect in liquids: General principles and a molecular-dynamics simulation of the cupric ion in water.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-10-19       Impact factor: 9.161

3.  ReaxFF(MgH) reactive force field for magnesium hydride systems.

Authors:  Sam Cheung; Wei-Qiao Deng; Adri C T van Duin; William A Goddard
Journal:  J Phys Chem A       Date:  2005-02-10       Impact factor: 2.781

4.  Coordination properties of the oxime analogue of glycine to Cu(II).

Authors:  I Georgieva; N Trendafilova; L Rodríguez-Santiago; M Sodupe
Journal:  J Phys Chem A       Date:  2005-06-30       Impact factor: 2.781

5.  The solution structure of [Cu(aq)]2+ and its implications for rack-induced bonding in blue copper protein active sites.

Authors:  Patrick Frank; Maurizio Benfatto; Robert K Szilagyi; Paola D'Angelo; Stefano Della Longa; Keith O Hodgson
Journal:  Inorg Chem       Date:  2005-03-21       Impact factor: 5.165

6.  Simulations on the thermal decomposition of a poly(dimethylsiloxane) polymer using the ReaxFF reactive force field.

Authors:  Kimberly Chenoweth; Sam Cheung; Adri C T van Duin; William A Goddard; Edward M Kober
Journal:  J Am Chem Soc       Date:  2005-05-18       Impact factor: 15.419

7.  Copper cation interactions with biologically essential types of ligands: a computational DFT study.

Authors:  Matej Pavelka; Milan Simanek; Jirí Sponer; Jaroslav V Burda
Journal:  J Phys Chem A       Date:  2006-04-13       Impact factor: 2.781

8.  Factors governing the metal coordination number in isolated group IA and IIA metal hydrates.

Authors:  Ingvar Tunell; Carmay Lim
Journal:  Inorg Chem       Date:  2006-06-12       Impact factor: 5.165

9.  Hydration of copper(II): new insights from density functional theory and the COSMO solvation model.

Authors:  Vyacheslav S Bryantsev; Mamadou S Diallo; Adri C T van Duin; William A Goddard
Journal:  J Phys Chem A       Date:  2008-09-03       Impact factor: 2.781

10.  Is the peptide bond formation activated by Cu(2+) interactions? Insights from density functional calculations.

Authors:  A Rimola; L Rodríguez-Santiago; P Ugliengo; M Sodupe
Journal:  J Phys Chem B       Date:  2007-05-01       Impact factor: 2.991

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  10 in total

Review 1.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

2.  Atomic origin of ultrafast resistance switching in nanoscale electrometallization cells.

Authors:  Nicolas Onofrio; David Guzman; Alejandro Strachan
Journal:  Nat Mater       Date:  2015-03-02       Impact factor: 43.841

3.  An Angular Overlap Model for Cu(II) Ion in the AMOEBA Polarizable Force Field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2014       Impact factor: 6.006

4.  Full atomistic reaction mechanism with kinetics for CO reduction on Cu(100) from ab initio molecular dynamics free-energy calculations at 298 K.

Authors:  Tao Cheng; Hai Xiao; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

Review 5.  Molecular Forcefield Methods for Describing Energetic Molecular Crystals: A Review.

Authors:  Wen Qian; Xianggui Xue; Jian Liu; Chaoyang Zhang
Journal:  Molecules       Date:  2022-02-28       Impact factor: 4.411

6.  Molecular Dynamics Simulation of a Single Carbon Chain through an Asymmetric Double-Layer Graphene Nanopore for Prolonging the Translocation Time.

Authors:  Yaohong Zhou; Haidong Wang
Journal:  ACS Omega       Date:  2022-05-06

7.  A valence bond model for aqueous Cu(II) and Zn(II) ions in the AMOEBA polarizable force field.

Authors:  Jin Yu Xiang; Jay W Ponder
Journal:  J Comput Chem       Date:  2012-12-05       Impact factor: 3.376

8.  Insights into dynamic sliding contacts from conductive atomic force microscopy.

Authors:  Nicholas Chan; Mohammad R Vazirisereshk; Ashlie Martini; Philip Egberts
Journal:  Nanoscale Adv       Date:  2020-07-24

9.  Atomic Level Insight into Wetting and Structure of Ag Droplet on Graphene Coated Copper Substrate-Molecular Dynamics versus Experiment.

Authors:  Aleksandra Drewienkiewicz; Arkadiusz Żydek; Marcela E Trybula; Janusz Pstruś
Journal:  Nanomaterials (Basel)       Date:  2021-06-01       Impact factor: 5.076

10.  Linking the evolution of catalytic properties and structural changes in copper-zinc nanocatalysts using operando EXAFS and neural-networks.

Authors:  Janis Timoshenko; Hyo Sang Jeon; Ilya Sinev; Felix T Haase; Antonia Herzog; Beatriz Roldan Cuenya
Journal:  Chem Sci       Date:  2020-03-11       Impact factor: 9.825

  10 in total

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