Literature DB >> 1408822

A rapid chemiluminescent method for quantitation of human DNA.

P S Walsh1, J Varlaro, R Reynolds.   

Abstract

A sensitive and simple method for the quantitation of human DNA is described. This method is based on probe hybridization to a human alpha satellite locus, D17Z1. The biotinylated probe is hybridized to sample DNA immobilized on nylon membrane. The subsequent binding of streptavidin-horseradish peroxidase to the bound probe allows for chemiluminescent detection using a luminol-based reagent and X-ray film. Less than 150 pg of human DNA can easily be detected with a 15 minute exposure. The entire procedure can be performed in 1.5 hours. Microgram quantities of nonhuman DNA have been tested and the results indicate very high specificity for human DNA. The data on film can be scanned into a computer and a commercially available program can be used to create a standard curve where DNA quantity is plotted against the mean density of each slot blot signal. The methods described can also be applied to the very sensitive determination of quantity and quality (size) of DNA on Southern blots. The high sensitivity of this quantitation method requires the consumption of only a fraction of sample for analysis. Determination of DNA quantity is necessary for RFLP and many PCR-based tests where optimal results are obtained only with a relatively narrow range of DNA quantities. The specificity of this quantitation method for human DNA will be useful for the analysis of samples that may also contain bacterial or other non-human DNA, for example forensic evidence samples, ancient DNA samples, or clinical samples.

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Year:  1992        PMID: 1408822      PMCID: PMC334284          DOI: 10.1093/nar/20.19.5061

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  Preferential PCR amplification of alleles: mechanisms and solutions.

Authors:  P S Walsh; H A Erlich; R Higuchi
Journal:  PCR Methods Appl       Date:  1992-05

2.  A simple and sensitive method for quantifying human genomic DNA in forensic specimen extracts.

Authors:  J S Waye; L A Presley; B Budowle; G G Shutler; R M Fourney
Journal:  Biotechniques       Date:  1989-09       Impact factor: 1.993

3.  Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

Authors:  P S Walsh; D A Metzger; R Higuchi
Journal:  Biotechniques       Date:  1991-04       Impact factor: 1.993

4.  HLA-DQ alpha allele and genotype frequencies in various human populations, determined by using enzymatic amplification and oligonucleotide probes.

Authors:  R Helmuth; N Fildes; E Blake; M C Luce; J Chimera; R Madej; C Gorodezky; M Stoneking; N Schmill; W Klitz
Journal:  Am J Hum Genet       Date:  1990-09       Impact factor: 11.025

5.  Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.

Authors:  R K Saiki; D H Gelfand; S Stoffel; S J Scharf; R Higuchi; G T Horn; K B Mullis; H A Erlich
Journal:  Science       Date:  1988-01-29       Impact factor: 47.728

6.  Mitochondrial DNA sequences from a 7000-year old brain.

Authors:  S Pääbo; J A Gifford; A C Wilson
Journal:  Nucleic Acids Res       Date:  1988-10-25       Impact factor: 16.971

7.  Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome.

Authors:  J S Waye; H F Willard
Journal:  Mol Cell Biol       Date:  1986-09       Impact factor: 4.272

8.  Hypervariable 'minisatellite' regions in human DNA.

Authors:  A J Jeffreys; V Wilson; S L Thein
Journal:  Nature       Date:  1985 Mar 7-13       Impact factor: 49.962

9.  Assay for nanogram quantities of DNA in cellular homogenates.

Authors:  C F Brunk; K C Jones; T W James
Journal:  Anal Biochem       Date:  1979-01-15       Impact factor: 3.365

10.  Picogram quantitation of total DNA using DNA-binding proteins in a silicon sensor-based system.

Authors:  V T Kung; P R Panfili; E L Sheldon; R S King; P A Nagainis; B Gomez; D A Ross; J Briggs; R F Zuk
Journal:  Anal Biochem       Date:  1990-06       Impact factor: 3.365

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  11 in total

1.  The frequency of heteroplasmy in the HVII region of mtDNA differs across tissue types and increases with age.

Authors:  C D Calloway; R L Reynolds; G L Herrin; W W Anderson
Journal:  Am J Hum Genet       Date:  2000-03-17       Impact factor: 11.025

2.  Structural variation in the alleles of a short tandem repeat system at the human alpha fibrinogen locus.

Authors:  M D Barber; B J McKeown; B H Parkin
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

3.  Quantitative analysis of ras gene mutation in pancreatic juice for diagnosis of pancreatic adenocarcinoma.

Authors:  M Tada; T Teratani; Y Komatsu; T Kawabe; Y Shiratori; M Omata
Journal:  Dig Dis Sci       Date:  1998-01       Impact factor: 3.199

4.  DNA typing from human faeces.

Authors:  A J Hopwood; A Mannucci; K M Sullivan
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

5.  The validation of a 7-locus multiplex STR test for use in forensic casework. (I). Mixtures, ageing, degradation and species studies.

Authors:  R Sparkes; C Kimpton; S Watson; N Oldroyd; T Clayton; L Barnett; J Arnold; C Thompson; R Hale; J Chapman; A Urquhart; P Gill
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

6.  mtDNA as a tool for identification of human remains. Identification using mtDNA.

Authors:  S Lutz; H J Weisser; J Heizmann; S Pollak
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

7.  Structural variation of novel alleles at the Hum vWA and Hum FES/FPS short tandem repeat loci.

Authors:  M D Barber; R C Piercy; J F Andersen; B H Parkin
Journal:  Int J Legal Med       Date:  1995       Impact factor: 2.686

8.  The validation of short tandem repeat (STR) loci for use in forensic casework.

Authors:  J E Lygo; P E Johnson; D J Holdaway; S Woodroffe; J P Whitaker; T M Clayton; C P Kimpton; P Gill
Journal:  Int J Legal Med       Date:  1994       Impact factor: 2.686

9.  Evaluation of an automated DNA profiling system employing multiplex amplification of four tetrameric STR loci.

Authors:  C Kimpton; D Fisher; S Watson; M Adams; A Urquhart; J Lygo; P Gill
Journal:  Int J Legal Med       Date:  1994       Impact factor: 2.686

10.  Mitochondrial DNA haplotyping revealed the presence of mixed up benign and neoplastic tissue sections from two individuals on the same prostatic biopsy slide.

Authors:  A Alonso; C Alves; M P Suárez-Mier; C Albarrán; L Pereira; L Fernández de Simón; P Martín; O García; L Gusmão; M Sancho; A Amorim
Journal:  J Clin Pathol       Date:  2005-01       Impact factor: 3.411

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