Literature DB >> 1384851

NMR spectroscopy of hydroxyl protons in aqueous solutions of peptides and proteins.

E Liepinsh1, G Otting, K Wüthrich.   

Abstract

Hydroxyl groups of serine and threonine, and to some extent also tyrosine are usually located on or near the surface of proteins. NMR observations of the hydroxyl protons is therefore of interest to support investigations of the protein surface in solution, and knowledge of the hydroxyl NMR lines is indispensable as a reference for studies of protein hydration in solution. In this paper, solvent suppression schemes recently developed for observation of hydration water resonances were used to observe hydroxyl protons of serine, threonine and tyrosine in aqueous solutions of small model peptides and the protein basic pancreatic trypsin inhibitor (BPTI). The chemical shifts of the hydroxyl protons of serine and threonine were found to be between 5.4 and 6.2 ppm, with random-coil shifts at 4 degrees C of 5.92 ppm and 5.88 ppm, respectively, and those of tyrosine between 9.6 and 10.1 ppm, with a random-coil shift of 9.78 ppm. Since these spectral regions are virtually free of other polypeptide 1H NMR signals, cross peaks with the hydroxyl protons are usually well separated even in homonuclear two-dimensional 1H NMR spectra. To illustrate the practical use of hydroxyl proton NMR in polypeptides, the conformations of the side-chain hydroxyl groups in BPTI were characterized by measurements of nuclear Overhauser effects and scalar coupling constants involving the hydroxyl protons. In addition, hydroxyl proton exchange rates were measured as a function of pH, where simple first-order rate processes were observed for both acid- and base-catalysed exchange of all but one of the hydroxyl-bearing residues in BPTI. For the conformations of the individual Ser, Thr and Tyr side chains characterized in the solution structure with the use of hydroxyl proton NMR, both exact coincidence and significant differences relative to the corresponding BPTI crystal structure data were observed.

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Year:  1992        PMID: 1384851     DOI: 10.1007/bf02192808

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  Protein hydration in aqueous solution.

Authors:  G Otting; E Liepinsh; K Wüthrich
Journal:  Science       Date:  1991-11-15       Impact factor: 47.728

2.  Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA.

Authors:  P Güntert; W Braun; K Wüthrich
Journal:  J Mol Biol       Date:  1991-02-05       Impact factor: 5.469

3.  Protein hydration studied with homonuclear 3D 1H NMR experiments.

Authors:  G Otting; E Liepinsh; B T Farmer; K Wüthrich
Journal:  J Biomol NMR       Date:  1991-07       Impact factor: 2.835

4.  Proton magnetic resonance study of the hydration of glucose.

Authors:  J M Harvey; M C Symons; R J Naftalin
Journal:  Nature       Date:  1976-06-03       Impact factor: 49.962

5.  Structure of form III crystals of bovine pancreatic trypsin inhibitor.

Authors:  A Wlodawer; J Nachman; G L Gilliland; W Gallagher; C Woodward
Journal:  J Mol Biol       Date:  1987-12-05       Impact factor: 5.469

6.  Amino acid preferences for specific locations at the ends of alpha helices.

Authors:  J S Richardson; D C Richardson
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

7.  Capping and alpha-helix stability.

Authors:  L Serrano; A R Fersht
Journal:  Nature       Date:  1989-11-16       Impact factor: 49.962

8.  Structure determination of the Antp (C39----S) homeodomain from nuclear magnetic resonance data in solution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA.

Authors:  P Güntert; Y Q Qian; G Otting; M Müller; W Gehring; K Wüthrich
Journal:  J Mol Biol       Date:  1991-02-05       Impact factor: 5.469

9.  Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance.

Authors:  G Wagner; K Wüthrich
Journal:  J Mol Biol       Date:  1982-09-15       Impact factor: 5.469

10.  The solution conformation of sialyl-alpha (2----6)-lactose studied by modern NMR techniques and Monte Carlo simulations.

Authors:  L Poppe; R Stuike-Prill; B Meyer; H van Halbeek
Journal:  J Biomol NMR       Date:  1992-03       Impact factor: 2.835

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  34 in total

1.  Orientational order and dynamics of hydration water in a single crystal of bovine pancreatic trypsin inhibitor.

Authors:  K Venu; L A Svensson; B Halle
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

2.  NMR structure of a variant 434 repressor DNA-binding domain devoid of hydroxyl groups.

Authors:  Hideo Iwai; Gerhard Wider; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

3.  Protein alignment using cellulose nanocrystals: practical considerations and range of application.

Authors:  Alexey Y Denisov; Elisabeth Kloser; Derek G Gray; Anthony K Mittermaier
Journal:  J Biomol NMR       Date:  2010-05-12       Impact factor: 2.835

4.  Band-selective editing of exchange-relay in protein-water NOE experiments.

Authors:  G Melacini; R Boelens; R Kaptein
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

5.  Correction of the NMR structure of the ETS1/DNA complex.

Authors:  M H Werner; G M Clore; C L Fisher; R J Fisher; L Trinh; J Shiloach; A M Gronenborn
Journal:  J Biomol NMR       Date:  1997-12       Impact factor: 2.835

Review 6.  Mechanisms and uses of hydrogen exchange.

Authors:  S W Englander; T R Sosnick; J J Englander; L Mayne
Journal:  Curr Opin Struct Biol       Date:  1996-02       Impact factor: 6.809

Review 7.  NMR spectroscopy of peptides and proteins. Practical considerations.

Authors:  M G Hinds; R S Norton
Journal:  Mol Biotechnol       Date:  1997-06       Impact factor: 2.695

8.  A study of protein-water exchange through the off-resonance ROESY experiment: application to the DNA-binding domain of AlcR.

Authors:  N Birlirakis; R Cerdan; E Guittet
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

9.  Hydration of the partially folded peptide RN-24 studied by multidimensional NMR.

Authors:  R Brüschweiler; D Morikis; P E Wright
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

10.  The Trp-cage: optimizing the stability of a globular miniprotein.

Authors:  Bipasha Barua; Jasper C Lin; Victoria D Williams; Phillip Kummler; Jonathan W Neidigh; Niels H Andersen
Journal:  Protein Eng Des Sel       Date:  2008-01-18       Impact factor: 1.650

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